checkOutliers: Check 'RGList' object for outlying values

In MmPalateMiRNA: Murine Palate miRNA Expression Analysis

Description

Checks each of the red and green foreground and background channels in an RGList for outlying values.

Usage

checkOutliers(obj)
## S4 method for signature 'RGList'
checkOutliers(obj)

Arguments

obj	An RGList object

Details

Detects outliers outside range of mean +/- 2.665 standard deviations. Returns the indexes of outlying observations in each channel (R,Rb and G,Gb).

Value

Returns a list with the following components

Rout	index of outliers in the red channel (obj$R)
Rbout	index of outliers in the red background channel (obj$Rb)
Gout	index of outliers in the green channel (obj$G)
Gbout	index of outliers in the green background channel (obj$Gb)

Methods

signature(obj = "RGList")

See Also

fixOutliers, checkMVs, fixMVs

Examples

data(PalateData)
outliers <- checkOutliers(PalateData)

MmPalateMiRNA documentation built on April 28, 2020, 7:54 p.m.