checkOutliers: Check 'RGList' object for outlying values

Description Usage Arguments Details Value Methods See Also Examples

Description

Checks each of the red and green foreground and background channels in an RGList for outlying values.

Usage

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checkOutliers(obj)
## S4 method for signature 'RGList'
checkOutliers(obj)

Arguments

obj

An RGList object

Details

Detects outliers outside range of mean +/- 2.665 standard deviations. Returns the indexes of outlying observations in each channel (R,Rb and G,Gb).

Value

Returns a list with the following components

Rout

index of outliers in the red channel (obj$R)

Rbout

index of outliers in the red background channel (obj$Rb)

Gout

index of outliers in the green channel (obj$G)

Gbout

index of outliers in the green background channel (obj$Gb)

Methods

signature(obj = "RGList")

See Also

fixOutliers, checkMVs, fixMVs

Examples

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MmPalateMiRNA documentation built on May 31, 2017, 3:47 p.m.