Biocview "SequenceMatching"

Analysis of high-throughput sequencing data processed by restriction enzyme digestion
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
CRISPR/Cas9 gRNA designer
crisprseekplus
crisprseekplus
dagLogo
dagLogo
dagLogo: a bioconductor package for visualizeing conserved amino acid sequence pattern in groups based on probability theory
dagLogo: a bioconductor package for visualizeing conserved amino acid sequence pattern in groups based on probability theory
Data and functions for dealing with microRNAs
Data Independent Acquisition Library Editing to Convert The Species
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo: A comparative visualisation of biooligomer motifs
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
Dual redundant reference sequencing
EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices
EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices
Efficient manipulation of biological strings
Efficient manipulation of biological strings
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens
Finding Co-occuring motifs of transcription factor binding sites
Find SNV/Indel differences between two bam files with near relationship
Flexible Heatmaps for Functional Genomics and Sequence Features
Flexible Heatmaps for Functional Genomics and Sequence Features
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Identification and Annotation of Protein Hotspot Residues
Identification and Annotation of Protein Hotspot Residues
Identification of potential quadruplex forming sequences
Implementation of the dot bracket annotations with Biostrings
Implementation of the dot bracket annotations with Biostrings
Inference on agreement between ordered lists
Inference on agreement between ordered lists
Infrastructure for Biostrings-based genome data packages
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Interlog protein network reconstruction by Mapping and Mining ANalysis
Interlog protein network reconstruction by Mapping and Mining ANalysis
Introduce *Ranges to bedtools users
Introduce *Ranges to bedtools users
IPD IMGT/HLA and IPD KIR database for Homo sapiens
IPD IMGT/HLA and IPD KIR database for Homo sapiens
KinSwingR: network-based kinase activity prediction
KinSwingR: network-based kinase activity prediction
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
Microbial Comparative Genomics in R
Microbial Comparative Genomics in R
Multiple Sequence Alignment with MUSCLE
Murine Palate miRNA Expression Analysis
Perform Methylation Analysis on Next Generation Sequencing Data
pipeline for single cell RNA-seq data analysis
pipeline for single cell RNA-seq data analysis
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Prediction of Protein Conserved Regions Using NADDA Algorithm
PWM enrichment analysis
Quasispecies Diversity
Quasispecies Diversity
R package for analysing TFBSs in DNA sequences
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Search and visualize intramolecular triplex-forming sequences in DNA
Sequence logos for DNA sequence alignments
Sequence logos for DNA sequence alignments
Software infrastructure for efficient representation of full genomes and their SNPs
Software infrastructure for efficient representation of full genomes and their SNPs
Subread Sequence Alignment and Counting for R
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences