Biocview "SequenceMatching"

Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
crisprseekplus
crisprseekplus
crisprseekplus
dagLogo
dagLogo
dagLogo
dagLogo
Data and functions for dealing with microRNAs
Data and functions for dealing with microRNAs
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo: A comparative visualisation of biooligomer motifs
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
Efficient manipulation of biological strings
Efficient manipulation of biological strings
Finding Co-occuring motifs of transcription factor binding sites
Finding Co-occuring motifs of transcription factor binding sites
Find SNV/Indel differences between two bam files with near relationship
Find SNV/Indel differences between two bam files with near relationship
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Flexible Heatmaps for Functional Genomics and Sequence Features
Flexible Heatmaps for Functional Genomics and Sequence Features
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Identification of potential quadruplex forming sequences
Identification of potential quadruplex forming sequences
Inference on agreement between ordered lists
Inference on agreement between ordered lists
Inference on agreement between ordered lists
Infrastructure for Biostrings-based genome data packages
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Interlog protein network reconstruction by Mapping and Mining ANalysis
Introduce *Ranges to bedtools users
Introduce *Ranges to bedtools users
Introduce *Ranges to bedtools users
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
Microbial Comparative Genomics in R
Microbial Comparative Genomics in R
Microbial Comparative Genomics in R
Multiple Sequence Alignment with MUSCLE
Multiple Sequence Alignment with MUSCLE
Murine Palate miRNA Expression Analysis
Murine Palate miRNA Expression Analysis
Package for EDLogo visualization, featuring string logos and adaptive scaling of position weight matrices
Perform Methylation Analysis on Next Generation Sequencing Data
Perform Methylation Analysis on Next Generation Sequencing Data
pipeline for single cell RNA-seq data analysis
pipeline for single cell RNA-seq data analysis
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
PWM enrichment analysis
PWM enrichment analysis
R package for analysing TFBSs in DNA sequences
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Search and visualize intramolecular triplex-forming sequences in DNA
Search and visualize intramolecular triplex-forming sequences in DNA
Sequence logos for DNA sequence alignments
Sequence logos for DNA sequence alignments
Sequence logos for DNA sequence alignments
Software infrastructure for efficient representation of full genomes and their SNPs
Software infrastructure for efficient representation of full genomes and their SNPs
String objects representing biological sequences, and matching algorithms
Subread sequence alignment for R
Subread sequence alignment for R
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences