MethTargetedNGS: Perform Methylation Analysis on Next Generation Sequencing Data

Perform step by step methylation analysis of Next Generation Sequencing data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MethTargetedNGS")
AuthorMuhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri
Bioconductor views Alignment DataImport Genetics ResearchField SequenceMatching Sequencing
Date of publicationNone
MaintainerMuhammad Ahmer Jamil <engr.ahmerjamil@gmail.com>
LicenseArtistic-2.0
Version1.6.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/bisulfiteConversion.R R/hmmer.R R/sequenceAlignment.R
build
build/vignette.rds
inst
inst/doc
inst/doc/MethTargetedNGS.R
inst/doc/MethTargetedNGS.Rnw
inst/doc/MethTargetedNGS.pdf
inst/extdata
inst/extdata/Healthy.fasta
inst/extdata/Reference.fasta
inst/extdata/Tumor.fasta
inst/extdata/bisulfite.fasta
inst/extdata/msa.fasta
man
man/MethTargetedNGS-package.Rd man/bconv.Rd man/compare_samples.Rd man/fishertest_cpg.Rd man/hmmbuild.Rd man/methAlign.Rd man/methAvg.Rd man/methEntropy.Rd man/methHeatmap.Rd man/nhmmer.Rd man/odd_ratio.Rd
vignettes
vignettes/MethTargetedNGS.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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