Perform Methylation Analysis on Next Generation Sequencing Data

bconv | Convert non-bisulfite sequences to bisulfite sequences. |

compare_samples | Complete Methylation Analysis of Next Generation Sequencing... |

fishertest_cpg | Perform Fisher Exact Test on Methylation Data. |

hmmbuild | Create Profile Hidden Markov Model of given aligned sequences |

methAlign | Align sequences with the reference sequence using... |

methAvg | Calculate Methylation Average of given methylation matrix |

methEntropy | Calculate Methylation Entropy |

methHeatmap | Generate Heatmap of the given methylation data. |

MethTargetedNGS-package | Methylation Analysis of Next Generation Sequencing data. |

nhmmer | Calculate likelihood of the given profile hidden markov model... |

odd_ratio | Calculate log odd ratio of the given samples (healthy/tumor) |

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