|bconv||Convert non-bisulfite sequences to bisulfite sequences.|
|compare_samples||Complete Methylation Analysis of Next Generation Sequencing...|
|fishertest_cpg||Perform Fisher Exact Test on Methylation Data.|
|hmmbuild||Create Profile Hidden Markov Model of given aligned sequences|
|methAlign||Align sequences with the reference sequence using...|
|methAvg||Calculate Methylation Average of given methylation matrix|
|methEntropy||Calculate Methylation Entropy|
|methHeatmap||Generate Heatmap of the given methylation data.|
|MethTargetedNGS-package||Methylation Analysis of Next Generation Sequencing data.|
|nhmmer||Calculate likelihood of the given profile hidden markov model...|
|odd_ratio||Calculate log odd ratio of the given samples (healthy/tumor)|
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