Methylation average of a CpG site is the percentage of unmethylated cytosine or methylated cytosine in a particular CpG site. The methylation average of a particular CpG site was calculated by number of cytosine divided by sum of total number of methylated and unmethylated cytosine at particular CpG site in a group of reads.
average = NC/(NC + NT)
Matrix from methAlign. Also matrix where columns represents Cytosine of CpG sites and rows represents sequences.
Boolean. TRUE if need a plot after calculation. Default FALSE
Vector containing average methylation of given methylation matrix. Length of the vector represents the number of CpG sites in methylation matrix.
Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil [email protected]
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