bconv: Convert non-bisulfite sequences to bisulfite sequences.

Description Usage Arguments Value Author(s) Examples

View source: R/bisulfiteConversion.R

Description

Bisulfite sequences are the bisulfite treated DNA sequences where all cytosines except cytosine from CpG sites are converted to thymie. This technique is used to determine pattern of methylation. This function convert all cytosine except cytosines from CpG sites to thymine.

Usage

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bconv(fasta_file, out_file = "output.fasta")

Arguments

fasta_file

: Input fasta file for conversion

out_file

: String value naming an output file. Default is output.fasta

Value

Fasta File

Author(s)

Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil [email protected]

Examples

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input =  system.file("extdata", "bisulfite.fasta", package = "MethTargetedNGS")
bconv(fasta_file = input, out_file = "output.fasta")

MethTargetedNGS documentation built on May 6, 2019, 2:04 a.m.