MethTargetedNGS-package: Methylation Analysis of Next Generation Sequencing data.

Description Details Author(s)

Description

This package helps in visualizing methylation in CpG sites in NGS data for given datasets (normal/tumor) and to identify differentially methylated CpG sites in normal/tumor. This package to help in perform profile hidden markov modelling of given sequences.

NOTE: For profile hidden markov model HMMER software is required

Details

Package: MethTargetedNGS
Type: Package
Version: 1.0
Date: 2015-01-20
License: Artistic-2.0

Compare methylation status/pattern between samples.

*compare_samples(healthy,tumor)

Sequence alignment and create methylation pattern

*methAlign(sequence_fasta, ref_seq)

Author(s)

Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil [email protected]


MethTargetedNGS documentation built on May 6, 2019, 2:04 a.m.