MethTargetedNGS-package: Methylation Analysis of Next Generation Sequencing data.
In MethTargetedNGS: Perform Methylation Analysis on Next Generation Sequencing Data
Description
This package helps in visualizing methylation in CpG sites in NGS data for given datasets (normal/tumor) and to identify differentially methylated CpG sites in normal/tumor.
This package to help in perform profile hidden markov modelling of given sequences.
NOTE: For profile hidden markov model HMMER software is required
Details
Package: MethTargetedNGS
Type: Package
Version: 1.0
Date: 2015-01-20
License: Artistic-2.0
Compare methylation status/pattern between samples.
*compare_samples(healthy,tumor)
Sequence alignment and create methylation pattern
*methAlign(sequence_fasta, ref_seq)
Author(s)
Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil engr.ahmerjamil@gmail.com
MethTargetedNGS documentation built on Nov. 8, 2020, 8:10 p.m.
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Description
This package helps in visualizing methylation in CpG sites in NGS data for given datasets (normal/tumor) and to identify differentially methylated CpG sites in normal/tumor. This package to help in perform profile hidden markov modelling of given sequences.
NOTE: For profile hidden markov model HMMER software is required
Details
| Package: | MethTargetedNGS |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2015-01-20 |
| License: | Artistic-2.0 |
Compare methylation status/pattern between samples.
*compare_samples(healthy,tumor)
Sequence alignment and create methylation pattern
*methAlign(sequence_fasta, ref_seq)
Author(s)
Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil engr.ahmerjamil@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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