Description Usage Arguments Value Author(s) See Also Examples

View source: R/sequenceAlignment.R

Log Odd ratio defines the hypomethylation and hypermethylation of a sample in comparison to the other sample.

1 |

`SampA` |
Matrix from methAlign. Also matrix where columns represents Cytosine of CpG sites and rows represents sequences. |

`SampB` |
Matrix from methAlign. Also matrix where columns represents Cytosine of CpG sites and rows represents sequences. |

`plot` |
Boolean. TRUE if need a plot after calculation. Default TRUE |

`main` |
Title of the plot |

Vector containing log odd ratios.

Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil [email protected]

1 2 3 4 5 6 7 | ```
healthy = system.file("extdata", "Healthy.fasta", package = "MethTargetedNGS")
tumor = system.file("extdata", "Tumor.fasta", package = "MethTargetedNGS")
reference = system.file("extdata", "Reference.fasta", package = "MethTargetedNGS")
healthy = methAlign(healthy,reference)
tumor = methAlign(tumor,reference)
odd_ratio(healthy,tumor)
``` |

MethTargetedNGS documentation built on May 6, 2019, 2:04 a.m.

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