Biocview "Alignment"

A graphical interface for the metagene package
A graphical interface for the metagene package
A graphical interface for the metagene package
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analyze high-throughput sequencing of T and B cell receptors
Analyze high-throughput sequencing of T and B cell receptors
Analyze high-throughput sequencing of T and B cell receptors
An R interface to the GMAP/GSNAP/GSTRUCT suite
An R interface to the GMAP/GSNAP/GSTRUCT suite
An R package for RNA visualization and analysis
An R package for RNA visualization and analysis
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
A package to produce metagene plots
A package to produce metagene plots
A package to produce metagene plots
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
Base Classes and Functions for Phylogenetic Tree Input and Output
Base Classes and Functions for Phylogenetic Tree Input and Output
Base Classes and Functions for Phylogenetic Tree Input and Output
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPUtils - A package to perform exploratory analysis of ChIP data and most commonly used QC measures
Differential Analyis of Hi-C Data
Differential Analyis of Hi-C Data
Differential Analyis of Hi-C Data
DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo: A comparative visualisation of biooligomer motifs
Extract read count signals from bam files
Extract read count signals from bam files
Extract read count signals from bam files
Find SNV/Indel differences between two bam files with near relationship
Find SNV/Indel differences between two bam files with near relationship
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Generate synthetic nucleosome maps
Generate synthetic nucleosome maps
Generate synthetic nucleosome maps
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Guitar
Guitar
GWAS trait-associated SNP enrichment analyses in genomic intervals
GWAS trait-associated SNP enrichment analyses in genomic intervals
Interface for Popular Multiple Sequence Alignment Tools
Intron-Exon Retention Estimator
Intron-Exon Retention Estimator
Intron-Exon Retention Estimator
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
Methods for identifying small RNA loci from high-throughput sequencing data
Methods for identifying small RNA loci from high-throughput sequencing data
Multiple Sequence Alignment
Multiple Sequence Alignment
Multiple Sequence Alignment with MUSCLE
Multiple Sequence Alignment with MUSCLE
Normalization and difference calling in ChIP-seq data
Normalization and difference calling in ChIP-seq data
Normalization and difference calling in ChIP-seq data
Outlier detection in multiple sequence alignments
Outlier detection in multiple sequence alignments
Perform Methylation Analysis on Next Generation Sequencing Data
Perform Methylation Analysis on Next Generation Sequencing Data
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Quantify and Annotate Short Reads in R
Quantify and Annotate Short Reads in R
R bowtie wrapper
R bowtie wrapper
Repetitive Element Methylation Prediction
Repetitive Element Methylation Prediction
Repetitive Element Methylation Prediction
Representation and manipulation of short genomic alignments
Representation and manipulation of short genomic alignments
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Segvis: A package for visualization of high throughout sequencing data along genomic segments
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Software Package for Transcription Factor Binding Site (TFBS) Analysis
String objects representing biological sequences, and matching algorithms
String objects representing biological sequences, and matching algorithms
Subread sequence alignment for R
Subread sequence alignment for R
systemPipeRdata: NGS workflow templates and sample data
systemPipeR: NGS workflow and report generation environment
systemPipeR: NGS workflow and report generation environment
TARgeted SEQuencing Experiment Quality Control
TARgeted SEQuencing Experiment Quality Control
Tools for curating, analyzing, and manipulating biological sequences
Tools for curating, analyzing, and manipulating biological sequences
Transcriptome-guided quality assessment of methylated RNA immunoprecipitation sequencing data
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Visualization Tool for Sequence Recombination and Reassortment
Visualization tools for gene fusions
Visualization tools for gene fusions
Visualization tools for gene fusions