UofABioinformaticsHub/rnaCleanR: Calculate strandness information of a bam file

This package aims to quantify and remove putative double strand DNA from a strand-specific RNA sample. There are also options and methods to plot the positive/negative proportions of all sliding windows, which allow users to have an idea of how much the sample was contaminated and the appropriate threshold to be used for filtering.

Getting started

Package details

Bioconductor views Alignment Coverage ImmunoOncology QualityControl RNASeq
MaintainerThu-Hien To <[email protected]>
LicenseGPL (>= 2)
Version1.1.2
URL https://github.com/UofABioinformaticsHub/strandCheckR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("UofABioinformaticsHub/rnaCleanR")
UofABioinformaticsHub/rnaCleanR documentation built on Feb. 6, 2019, 5:59 a.m.