dot-summarizeHist: Summarize the histogram of strand proportions from the input...
In UofABioinformaticsHub/rnaCleanR: Calculate strandness information of a bam file

Summarize the histogram of positive proportions from the input windows obtained from the function getStrandFromBamFile

1 2	.summarizeHist(windows, split = c(10L, 100L, 1000L), breaks = 100L, useCoverage = FALSE, groupBy = NULL, normalizeBy = NULL)

`windows`	data frame containing the strand information of the sliding windows. Windows can be obtained using the function `getStrandFromBamFile`.
`split`	an integer vector that specifies how you want to partition the windows based on the coverage. By default `split` = c(10,100,1000), which means that your windows will be partitionned into 4 groups, those have coverage < 10, from 10 to 100, from 100 to 1000, and > 1000
`breaks`	an integer giving the number of bins for the histogram
`useCoverage`	if TRUE then plot the coverage strand information, otherwise plot the number of reads strand information. FALSE by default
`groupBy`	the column names of windows that will be used to group the data
`normalizeBy`	instead of using the raw read count/coverage, we will normalize it to a proportion by dividing it to the total number of read count/coverage of windows that have the same value in the `normalizeBy` columns.