dot-calculateStrandCoverage: Calculate the strand information based on coverage

Description Usage Arguments Value

Description

Calculate the coverage coming from '+'/'-' reads in all sliding windows

Usage

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.calculateStrandCoverage(winPosAlignments, winNegAlignments,
  winWidth = 1000L, winStep = 100L)

Arguments

winPosAlignments

a list that has a 'Coverage' field containing coverage coming from positive reads

winNegAlignments

a list that has a 'Coverage' field containing coverage coming from negative reads

winWidth

the length of the sliding window, 1000 by default.

winStep

the step length to sliding the window, 100 by default.

Value

a list of two vectors, containing a positive/negative coverage of the input positive/negative windows


UofABioinformaticsHub/rnaCleanR documentation built on July 12, 2019, 10 p.m.