dot-calculateStrandNbReads: Calculate the strand information based on the number of reads

Description Usage Arguments Value

Description

Calculate the number of reads coming from '+'/'-' strands in all sliding wndows

Usage

1
.calculateStrandNbReads(winPosAlignments, winNegAlignments)

Arguments

winPosAlignments

a list that has a 'Win' field that contains information of sliding windows overalapping positive reads

winNegAlignments

a a list that has a 'Win' field that contains information of sliding windows overalapping negative reads

Value

a list of two vectors, containing a positive/negative number of reads of the input positive/negative windows


UofABioinformaticsHub/rnaCleanR documentation built on July 12, 2019, 10 p.m.