Rsamtools: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Package details

AuthorMartin Morgan, Hervé Pagès, Valerie Obenchain, Nathaniel Hayden
Bioconductor views Alignment Coverage DataImport QualityControl Sequencing
MaintainerBioconductor Package Maintainer <>
LicenseArtistic-2.0 | file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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Rsamtools documentation built on Nov. 8, 2020, 8:11 p.m.