Quickly test if a BAM file has paired end reads
Iterate through a BAM file until a paired-end read is encountered or the end of file is reached; report the occurrence of paired-end reads to the user.
character(1) BAM file name, or a
(optional) character(1) name of the index file of the 'BAM' file being processed; this is given without the '.bai' extension.
Additional arguments, currently unused.
A logical vector of length 1 containing TRUE is returned if BAM file contained paired end reads, FALSE otherwise.
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