transbioZI/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline

Genotype imputation is essential for genome-wide association studies (GWAS) to retrieve information of untyped variants and facilitate comparability across studies. Based on widely used and freely available tools, we have developed Gimpute, an automated processing and imputation pipeline for genome-wide association data. Gimpute includes processing steps for genotype liftOver, quality control, population outlier detection, haplotype pre-phasing, imputation, post imputation, data management and the extension to other existing pipeline.

install.packages("remotes")
remotes::install_github("transbioZI/Gimpute")