Genotype imputation is essential for genome-wide association studies (GWAS) to retrieve information of untyped variants and facilitate comparability across studies. Based on widely used and freely available tools, we have developed Gimpute, an automated processing and imputation pipeline for genome-wide association data. Gimpute includes processing steps for genotype liftOver, quality control, population outlier detection, haplotype pre-phasing, imputation, post imputation, data management and the extension to other existing pipeline.
|Author||Junfang Chen, Dietmar Lippold, Emanuel Schwarz|
|Bioconductor views||Alignment Genetics GenomeWideAssociation GenomicVariation QualityControl SNP VariantDetection|
|Maintainer||Junfang Chen <email@example.com>|
|Package repository||View on GitHub|
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