dot-getInfoScoreImpute2: Extract info score
In transbioZI/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
.getInfoScoreImpute2 R Documentation
Extract info score
Description
Extract info score file summarized from the output of IMPUTE2.
Usage
.getInfoScoreImpute2(suffix4impute2info, outputInfoFile)
Arguments
suffix4impute2info
the suffix of input IMPUTE2 generated files that
store the imputation quality score for each variant from .impute2_info files.
outputInfoFile
the output file of impute2 info scores consisting of
two columns: all imputed SNPs and their info scores.
Value
A pure text file contains the info scores of all imputed SNPs with
two columns: SNP names and the corresponding info scores. The header names
are "rsid" and "info".
Author(s)
Junfang Chen
transbioZI/Gimpute documentation built on April 10, 2022, 4:20 a.m.
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| .getInfoScoreImpute2 | R Documentation |
Extract info score
Description
Extract info score file summarized from the output of IMPUTE2.
Usage
.getInfoScoreImpute2(suffix4impute2info, outputInfoFile)
Arguments
suffix4impute2info |
the suffix of input IMPUTE2 generated files that store the imputation quality score for each variant from .impute2_info files. |
outputInfoFile |
the output file of impute2 info scores consisting of two columns: all imputed SNPs and their info scores. |
Value
A pure text file contains the info scores of all imputed SNPs with two columns: SNP names and the corresponding info scores. The header names are "rsid" and "info".
Author(s)
Junfang Chen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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