getGroupLabel: Get the outcome label of the genotype data
In transbioZI/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
View source: R/managePlinkData.R
getGroupLabel R Documentation
Get the outcome label of the genotype data
Description
Get the group label from the PLINK FAM file.
Usage
getGroupLabel(inputFAMfile)
Arguments
inputFAMfile
the PLINK FAM file.
Details
If the input FAM file also has missing outcomes, which are
shown in the sixth column of FAM file as "0", then an error is given.
Value
The group label of the genotype data: "control" or "case" or
"caseControl" indicating both groups exist.
Author(s)
Junfang Chen
Examples
famFile <- system.file("extdata", "genoUpdatedData.fam", package="Gimpute")
getGroupLabel(inputFAMfile=famFile)
transbioZI/Gimpute documentation built on April 10, 2022, 4:20 a.m.
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View source: R/managePlinkData.R
| getGroupLabel | R Documentation |
Get the outcome label of the genotype data
Description
Get the group label from the PLINK FAM file.
Usage
getGroupLabel(inputFAMfile)
Arguments
inputFAMfile |
the PLINK FAM file. |
Details
If the input FAM file also has missing outcomes, which are shown in the sixth column of FAM file as "0", then an error is given.
Value
The group label of the genotype data: "control" or "case" or "caseControl" indicating both groups exist.
Author(s)
Junfang Chen
Examples
famFile <- system.file("extdata", "genoUpdatedData.fam", package="Gimpute")
getGroupLabel(inputFAMfile=famFile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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