dot-snpSharedPos: Find shared genomic position between two files.

In transbioZI/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline

Find shared genomic position between two files.

Description

Find shared genomic position between two files and return the snp names of the second input file.

Usage

.snpSharedPos(inputFile1, inputFile2, outputFile, nCore = 20)

Arguments

inputFile1	the pure text file that has at least three columns: chromosomal location, snp name and base-pair position, with the name c("chr", "rsID", "pos")
inputFile2	the pure text file that has at least three columns: chromosomal location, snp name and base-pair position, with the name c("chr", "rsID", "pos")
outputFile	the pure text file return the snp name of the second input file.
nCore	the number of cores used for computation. The default is 20.

Value

The snp name of the second input file which shares the same genomic position with that of the first input file.

transbioZI/Gimpute documentation built on April 10, 2022, 4:20 a.m.