Biocview "GenomeWideAssociation"

Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
Association analysis of CNVs and imputed SNPs incorporating uncertainty
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns.
Computes estimates of the probability of related individuals sharing a rare variant
Controlling bias and inflation in association studies using the empirical null distribution
GEM: fast association study for the interplay of Gene, Environment and Methylation
GEM: fast association study for the interplay of Gene, Environment and Methylation
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Genome wide association studies of multiple traits with Bayesian multilvel models
Genome wide association studies of multiple traits with Bayesian multilvel models
Genotype Conditional Association TEST
Genotype Conditional Association TEST
Gimpute: An efficient genetic data processing and imputation pipeline
gin in R
gin in R
GISPA: Method for Gene Integrated Set Profile Analysis
Global Test for Counts
Global Test for Counts
GWAS Incorporating Networks
GWAS Incorporating Networks
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
Hierarchical Inference
Hierarchical Inference
Identification of candidate genes associated with genetic variation
Identification of candidate genes associated with genetic variation
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level
Qtlizer: comprehensive QTL annotation of GWAS results
Qtlizer: comprehensive QTL annotation of GWAS results
Repetitive Element Methylation Prediction
Repetitive Element Methylation Prediction
REST API Client for the NHGRI-EBI GWAS Catalog
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R package for Manhattan Plots
R package for Manhattan Plots
rqt: utilities for gene-level meta-analysis
rqt: utilities for gene-level meta-analysis
rqt: utilities for gene-level meta-analysis
SISPA: Method for Sample Integrated Set Profile Analysis
SISPA: Method for Sample Integrated Set Profile Analysis
Summarization and expression/phenotype association of CNV ranges
Summarization and expression/phenotype association of CNV ranges
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for Testing Gene-Gene Interaction at the Gene Level