TiphaineCMartin/coMET: coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.

Getting started

Package details

AuthorTiphaine C. Martin [aut,cre], Thomas Hardiman [aut], Idil Yet [aut], Pei-Chien Tsai [aut], Jordana T. Bell [aut]
Bioconductor views ChIPSeq DNAMethylation DNASeq DifferentialMethylation ExomeSeq FunctionalGenomics Genetics GenomeWideAssociation MethylSeq MethylationArray Microarray MotifAnnotation RNASeq RiboSeq Sequencing Software Visualization
MaintainerTiphaine Martin <tiphaine.martin@mssm.edu>
LicenseGPL (>= 2)
Version1.11.5
URL http://epigen.kcl.ac.uk/comet
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("TiphaineCMartin/coMET")
TiphaineCMartin/coMET documentation built on May 9, 2019, 4:48 p.m.