Biocview "Genetics"

A/B compartment inference from ATAC-seq and methylation array data
A/B compartment inference from ATAC-seq and methylation array data
A/B compartment inference from ATAC-seq and methylation array data
Affected pathway ranking in differential gene expression analysis
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
A GAM based framework for analysis of ChIP-Seq data
A GAM based framework for analysis of ChIP-Seq data
A GAM based framework for analysis of ChIP-Seq data
A graphical interface for the metagene package
A graphical interface for the metagene package
Agreement of Differential Expression Analysis
A lecture on sequence count data
Analysis of Parent-Specific DNA Copy Numbers
Analysis of Parent-Specific DNA Copy Numbers
Analysis of sequencing data from ribosome profiling experiments
Analytical Tools for MassArray Data
Analyze comorbidities from electronic health record data
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
An integrated analysis package of Gene expression and Copy number alteration
An integrated analysis package of miRNA and mRNA expression data
An integrated analysis package of miRNA and mRNA expression data
Annotation of Genetic Variants
Annotation of Genetic Variants
Annotation of Genetic Variants
Annotation package for the Leishmania.major.Friedlin object
Annotation package for the Solanum.lycopersicum object
Annotation package for the Trypanosoma.cruzi.CLBrener.Esmeraldo object
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s)
Annotation package for TxDb object(s) for Brachypodium distachyon (JGI version 3.1)
An R package for nucleosome positioning prediction
An R package for prediction of nucleosome positions
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets
A package to produce metagene plots
A package to produce metagene plots
A package to produce metagene plots
A small RNA-seq visualizer and analysis toolkit
A Software Suite for Shallow Sequencing Copy Number Analysis
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Gene Predictions Using Proteomics and Evolutionary Conservation
Assess Gene Predictions Using Proteomics and Evolutionary Conservation
Association analysis of CNVs and imputed SNPs incorporating uncertainty
Association analysis of genomic regions based on permutation tests
Association analysis of genomic regions based on permutation tests
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
a tool set for pathway based data integration and visualization
a tool set for pathway based data integration and visualization
a tool set for pathway based data integration and visualization
a tool set for pathway based data integration and visualization
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Base package for enabling powerful shiny web displays of Bioconductor objects
Base package for enabling powerful shiny web displays of Bioconductor objects
Base package for enabling powerful shiny web displays of Bioconductor objects
Bayesian clustering and imputationa of single cell methylomes
Bayesian clustering and imputationa of single cell methylomes
BEAT - BS-Seq Epimutation Analysis Toolkit
Bias-free Footprint Enrichment Test
Bias-free Footprint Enrichment Test
Bioconductor Tools for Human Mitochondrial Variant Analysis
Bioconductor Tools for Human Mitochondrial Variant Analysis
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Cancer mutation analysis
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate Gene Prioritization for Non-Communicable Diseases Based on Functional Information
Candidate Gene Prioritization for Non-Communicable Diseases Based on Functional Information
Check Yeast Deletion Barcodes
ChIP-Seq Analysis with Windows
ChIP-Seq Analysis with Windows
Chromosomal DNA of Saccharomyces cerevisiae
Chromosome Instability Index
Chromosome plus MT plus rDNA sequences for riz (based on ensembl)
Chromosome plus MT plus rDNA sequences for riz (based on ensembl)
Classes and functions for Array Comparative Genomic Hybridization data
Clonal ordering and visualization
Clustering of Time Series Gene Expression data
Clustering of Time Series Gene Expression data
cn.mops - Mixture of Poissons for CNV detection in NGS data
CNV detection tool for targeted NGS panel data
CNV detection tool for targeted NGS panel data
Coliphage Phi-X174 Complete Genome
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns.
Compare multiple ChIP-Seq experiments.
Comprehensive genome-wide analysis of mutational processes
Comprehensive genome-wide analysis of mutational processes
Comprehensive genome-wide analysis of mutational processes
Comprehensive QTL annotation of GWAS results
Comprehensive QTL annotation of GWAS results
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Computational pipeline for computing probability of modification from structure probing experiment data
Computational pipeline for computing probability of modification from structure probing experiment data
Computes estimates of the probability of related individuals sharing a rare variant
Conveniently access PyRanges functionalities from Bioconductor
Conveniently import and query gene models
Conveniently import and query gene models
Copy number analysis of high-throughput sequencing cancer data
Copy Number study and Segmentation for multivariate biological data
Copy number variant detection from exome sequencing read depth
Count summarization and normalization for RNA-Seq data
Covariate Assisted Large-scale Multiple testing
Covariate Assisted Large-scale Multiple testing
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Cross omic genetic fingerprinting
Cross omic genetic fingerprinting
Data-Adaptive Statistics for High-Dimensional Multiple Testing
Data-Adaptive Statistics for High-Dimensional Multiple Testing
Data management of large-scale whole-genome sequence variant calls
Data management of large-scale whole-genome sequence variant calls
Decomposition of individual tumors into mutational signatures by signature refitting
Decomposition of individual tumors into mutational signatures by signature refitting
Delineate outstanding genomic zones of differential gene activity
Delineate outstanding genomic zones of differential gene activity
de novo Annotation of Pack-TYPE Transposable Elements
de novo Annotation of Pack-TYPE Transposable Elements
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Differential Binding of Transcription Factor with ChIP-seq
Differential Coverage package
Differential Expression Analysis for RNA-seq data through a robust variance component test
Differential gene usage in immune repertoires
Differential gene usage in immune repertoires
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
distinct: a method for differential analyses via hierarchical permutation tests
Distributed computing by file or by range
Distributed computing by file or by range
DMR calculation
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
Dual redundant reference sequencing
Efficient manipulation of biological strings
Efficient manipulation of biological strings
Efficient manipulation of biological strings
Empirical Analysis of Digital Gene Expression Data in R
Ensemble of Gene Set Enrichment Analyses
Ensemble of Gene Set Enrichment Analyses
Epistasis Analysis for Quantitative Traits by Functional Regression Model
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Evolutionary and plasticity analysis of orthologous groups
Expression Weighted Celltype Enrichment
Expression Weighted Celltype Enrichment
Feature-based association and gene-set enrichment for copy number alteration analysis in cancer
Filtering of coding and non-coding genetic variants
Filtering of coding and non-coding genetic variants
Finding the DNA and protein sequences in a list of genomic or proteomic loci
Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci
Find RAre Splicing Events in RNA-Seq Data
Find RAre Splicing Events in RNA-Seq Data
Find RAre Splicing Events in RNA-Seq Data
FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data
Full genome sequences for Brachypodium distachyon (JGI version 3.0 assembly)
Full genome sequences for Caenorhabditis elegans (UCSC version ce10)
Full genome sequences for Drosophila melanogaster (flybase version dm3)
Full genome sequences for Homo sapiens (UCSC version hg19)
Full genome sequences for Medicago truncatula (JCVI version Mt4.0v1)
Full genome sequences for P. falciparum 3D7
Full genome sequences for Zea mays PH207 (v1.0)
Full masked genome sequences for Mus musculus (UCSC version mm10)
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Functionality Visualization for Motifs
Functional Network Analysis
Functional Network Analysis
Functions for designing genetics studies
functions for genome-wide application of Liquid Association
functions for genome-wide application of Liquid Association
Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences
Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences
Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences
Gene Break Detection
Gene Environment Wide Interaction Search Threshold
Gene Environment Wide Interaction Search Threshold
Generally Applicable Gene-set Enrichment for Pathway Analysis
Generate synthetic nucleosome maps
Generate synthetic nucleosome maps
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
genesis assocation testing code rewrite
genesis assocation testing code rewrite
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Gene transfer format files for common ChIP-seq model organisms
Genome sequencing project metadata
Genome sequencing project metadata
Genometric Correlation package
Genome wide association studies of multiple traits with Bayesian multilvel models
Genome wide association studies of multiple traits with Bayesian multilvel models
Genome wide association studies of multiple traits with Bayesian multilvel models
Genomic Visualisation Routines
genotyping and copy number study tools
Genotyping and QTL Mapping in DO Mice
Genotyping and QTL Mapping in DO Mice
Get inversion status in predefined regions
Get inversion status in predefined regions
Get inversion status in predefined regions
Get the QTL/gene/SNP data functions
GGBase infrastructure for genetics of gene expression package GGtools
Gimpute: An efficient genetic data processing and imputation pipeline
gin in R
gin in R
Global visualization tool of genomic data
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLstats: computationally efficient analysis for eQTL and allied studies
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture
gRx Differential Clustering
GWAS Incorporating Networks
GWAS Incorporating Networks
GWAS trait-associated SNP enrichment analyses in genomic intervals
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
HLA Genotype Imputation with Attribute Bagging
HLA Genotype Imputation with Attribute Bagging
HMMRATAC - a semi-supervised machine learning approach for identifying open chromatin regions from ATAC-Seq data using Hidden Markov Models.
Human ChIP-seq peaks data from ENCODE and ROADMAP Epigenomics
Hybrid Multiple Testing
Identification of SNP Interactions
Identification of SNP Interactions
Identify Different Architectures of Sequence Elements
Illumina 450K methylation array spatial analysis methods
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Improves Early Build Genome Assemblies using Strand-Seq Data
Improves Early Build Genome Assemblies using Strand-Seq Data
Infer Copy Number Variation from Single-Cell RNA-Seq Data
Infer Copy Number Variation from Single-Cell RNA-Seq Data
Infer Copy Number Variation from Single-Cell RNA-Seq Data
Inference of Chromosome-length Haplotypes using Genomic Data of Single Gamete Cells
Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells
Inference on agreement between ordered lists
Inference on agreement between ordered lists
Infers clonal composition of a tumor
Infrastructure for Biostrings-based genome data packages
Infrastructure to work with genomewide position-specific scores
Infrastructure to work with genomewide position-specific scores
In-silico methods for finemapping of genetic regions in inbred mice
In-silico methods for finemapping of genetic regions in inbred mice
Integrative analysis of structural variations
Integrative analysis of structural variations
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Statistics of alleLe Dependent Expression
Interface for Popular Multiple Sequence Alignment Tools
Interface to the Basic Local Alignment Search Tool (BLAST)
Interface to the RDP Classifier
Investigates Allele Specific Expression
Investigates Allele Specific Expression
iSTOP - Induced STOP Experiment Design
iSTOP - Induced STOP Experiment Design
Iterative Pruning to Capture Population Structure
Iterative Pruning to Capture Population Structure
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level
Linear model and normality based normalization and transformation method (Linnorm)
Linear Models for Microarray Data
LiquidAssociation
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
MAGMA.Celltyping
Marker Gene Finder in Microarray gene expression data
Marker Gene Finder in RNA-seq data
Metabarcoding and microbiome analysis using multiple amplicons
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Methylated CpGs Set Enrichment Analysis
Methylated CpGs Set Enrichment Analysis
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Microarray Analysis of Differential Expression
Microbial Assemblage Normalized Transcript Analysis
Microbial Assemblage Normalized Transcript Analysis
mirhostgenes: putting miRNAs into genomic context
MLP
Model higher-order methylation profiles
Model higher-order methylation profiles
Model higher-order methylation profiles
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Multiple Sequence Alignment with MUSCLE
Multivariate Analysis of Genotype–Phenotype Association and Visualization for 3D Image
Normalization and difference calling in ChIP-seq data
Normalization and difference calling in ChIP-seq data
Nucleosome Dynamics
Nucleosome positioning package for R
Nucleosome positioning package for R
Nucleosome positioning package for R
Nucleosome positioning package for R
Objective Assessment of Copy-Number Estimates
Obtain total affinity and occupancies for binding site matrices on a given sequence
Obtain total affinity and occupancies for binding site matrices on a given sequence
Operations on genomic intervals
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
OUTRIDER - OUTlier in RNA-Seq fInDER
OUTRIDER - OUTlier in RNA-Seq fInDER
Overlay omics data onto SBGN pathway diagram
Overlay omics data onto SBGN pathway diagram
Overlay omics data onto SBGN pathway diagram
Package for enabling powerful shiny web displays of Bioconductor objects
Pairwise INTegration of functional genomics data
Pairwise INTegration of functional genomics data
pairwise sequence alignment similarity simple.
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Parallel implmentation of bounded memory GEE
PatchseqMap
Pedigree Analysis and Familial Aggregation
Pedigree Analysis and Familial Aggregation
Pedigree Analysis and Familial Aggregation
Pedigree and genetic relationship functions
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Perform Methylation Analysis on Next Generation Sequencing Data
Phenotype Consensus ANalysis (PCAN)
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Population Genetics
Population Genetics
Position-Dependent Kernel Association Test
Position-Dependent Kernel Association Test
Position Related Data Analysis
Prediction of pri-miRNA Transcription Start Site
Prediction of pri-miRNA Transcription Start Site
Processing and analyzing bisulfite sequencing data
Produce heatmaps for RNA-Seq HIV data
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
QA/QC of a gVCF or VCF file
QA/QC of a gVCF or VCF file
Qtlizer: comprehensive QTL annotation of GWAS results
Quality control for target capture experiments
Quality control for target capture experiments
Quantify and Annotate Short Reads in R
Quantify and Annotate Short Reads in R
Quantitative comparison of multiple ChIP-seq datasets
Quantitative DNA Sequencing for Chromosomal Aberrations
Quantitative DNA Sequencing for Chromosomal Aberrations
Quasispecies Diversity
Quasispecies Diversity
Random Rotation Methods for High Dimensional Data with Batch Structure
Random Rotation Methods for High Dimensional Data with Batch Structure
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
R Client for Google Genomics API
R Client for Google Genomics API
Representation and manipulation of genomic intervals
Representation and manipulation of genomic intervals
Representation and manipulation of short genomic alignments
Representation and manipulation of short genomic alignments
representing and modeling data in the EMBL-EBI GWAS catalog
representing and modeling data in the EMBL-EBI GWAS catalog
Rhythmicity Analysis Incorporating Non-parametric Methods
RNA-binding protein motif analysis
RNA-binding protein motif analysis
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
Rothstein Lab SGA Analysis Tools
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R SDK for BaseSpace RESTful API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Semi-Supervised Mixture Model
Semi-Supervised Mixture Model
Shape-based Analysis of Variation in ChIP-seq using Functional PCA
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
snp.plotter
software and data for analyses in genetics of gene expression
Software infrastructure for efficient representation of full genomes and their SNPs
Software infrastructure for efficient representation of full genomes and their SNPs
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Statistical tools for the analysis of ChIP-seq data
Storing annotation in TranscriptDb objects
Strength of Selected Codon Usage
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subread Sequence Alignment and Counting for R
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
SummarizedExperiment container
SummarizedExperiment container
SummarizedExperiment container
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Support package for GenomicFeatures
Synteny Alignment and Analysis for Saccharomyces sensu stricto
Synthetic Lethal Genetic Interaction
systemPipeRdata: NGS workflow templates and sample data
systemPipeR: NGS workflow and report generation environment
systemPipeR: NGS workflow and report generation environment
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
The Discordant Method: A Novel Approach for Differential Correlation
The Discordant Method: A Novel Approach for Differential Correlation
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
Tools for computing, querying and storing linkage-disequilibrium data
Tools for curating, analyzing, and manipulating biological sequences
Tools for Exploratory Analysis of Variant Calls
Tools for Exploratory Analysis of Variant Calls
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for variant data
Tools for variant data
Tools for visualizing genomics data
Tools for visualizing genomics data
Tools for working with ScreenMill data
Tools for Working With Synteny Objects
Tools for Working With Synteny Objects
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcription Start Site Identification
Transcriptome instability analysis
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Utilities for ATACseq QC, differential accessibility, and integration
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Utilities to create and use an Ensembl based annotation database
Utilities to create and use Ensembl-based annotation databases
Utilities to create and use Ensembl-based annotation databases
Utilities to create and use Ensembl-based annotation databases
Utilities to create and use Ensembl-based annotation databases
Utility functions for high throughput sequencing
Variant annotations for structural variants
Variant annotations for structural variants
Variant annotations for structural variants
visualize genome-wide association study with gene annotation and linkage disequiblism