GGBase: GGBase infrastructure for genetics of gene expression package GGtools

infrastructure

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GGBase")
AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views Genetics Infrastructure
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version3.38.0

View on Bioconductor

Functions

allsnps Man page
casting Man page
clipPCs Man page
clipPCs,RangedSummarizedExperiment,numeric,logical-method Man page
clipPCs,RangedSummarizedExperiment,numeric,missing-method Man page
clipPCs,smlSet,numeric,logical-method Man page
clipPCs,smlSet,numeric,missing-method Man page
clipPCs,SummarizedExperiment,numeric,logical-method Man page
clipPCs,SummarizedExperiment,numeric,missing-method Man page
combine,smlSet,smlSet-method Man page
dropMonomorphies Man page
exprs,smlSet-method Man page
externalize Man page
genesym Man page
genesym,character-method Man page
genesym-class Man page
getSS Man page
GTFfilter Man page
MAFfilter Man page
make_smlSet Man page
nsFilter,smlSet-method Man page
permEx Man page
permEx,smlSet-method Man page
plot_EvG Man page
plot_EvG,genesym,rsid,smlSet-method Man page
plot_EvG,probeId,rsid,smlSet-method Man page
probeId Man page
probeId,character-method Man page
probeId-class Man page
regressOut Man page
rsid Man page
rsid,character-method Man page
rsid-class Man page
rsid,numeric-method Man page
smList Man page
smList,smlSet-method Man page
[,smlSet,ANY,ANY,ANY-method Man page
smlSet-class Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/casting.R R/externalize.R R/filters.R R/getSS.R R/make_smlSet.R R/permEx.R R/plot_EvG.R R/smlSet.R
build
build/vignette.rds
inst
inst/doc
inst/doc/ggbase.R
inst/doc/ggbase.Rnw
inst/doc/ggbase.pdf
inst/oldstuff
inst/oldstuff/DESCRIPTION
inst/oldstuff/GGBase.Rnw
inst/oldstuff/NAMESPACE
inst/oldstuff/makeSMLset.Rnw
inst/oldstuff/manpages
inst/oldstuff/manpages/GGBase-package.Rd
inst/oldstuff/manpages/MAFfilter.Rd
inst/oldstuff/manpages/SessionInfo-class.Rd
inst/oldstuff/manpages/casting.Rd
inst/oldstuff/manpages/featureFilter.Rd
inst/oldstuff/manpages/getSS.Rd
inst/oldstuff/manpages/gwSnpScreenResult-class.Rd
inst/oldstuff/manpages/multiCisTestResult-class.Rd
inst/oldstuff/manpages/plot_EvG-methods.Rd
inst/oldstuff/manpages/smlSummary.Rd
inst/oldstuff/newSNPloc.Rnw
inst/oldstuff/smlSet.example.rda
man
man/MAFfilter.Rd man/clipPCs.Rd man/externalize.Rd man/make_smlSet.Rd man/plot_EvG.Rd man/rsid-class.Rd man/smlSet-class.Rd
tests
tests/MAFfilter.R tests/make.R tests/plot_EvG.R
vignettes
vignettes/ggbase.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.