GGBase: GGBase infrastructure for genetics of gene expression package GGtools

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infrastructure

Author
VJ Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
VJ Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
3.36.0

View on Bioconductor

Man pages

clipPCs
transformations of expression data in smlSet instances
externalize
create a package with a decomposed smlSet instance from a...
MAFfilter
Filter genotype contents of an smlSet according to certain...
make_smlSet
construct an smlSet instance from existing resources
plot_EvG
display the association between expression values and...
rsid-class
Class '"rsid"'
smlSet-class
Class '"smlSet"'

Files in this package

GGBase/DESCRIPTION
GGBase/NAMESPACE
GGBase/NEWS
GGBase/R
GGBase/R/casting.R
GGBase/R/externalize.R
GGBase/R/filters.R
GGBase/R/getSS.R
GGBase/R/make_smlSet.R
GGBase/R/permEx.R
GGBase/R/plot_EvG.R
GGBase/R/smlSet.R
GGBase/build
GGBase/build/vignette.rds
GGBase/inst
GGBase/inst/doc
GGBase/inst/doc/ggbase.R
GGBase/inst/doc/ggbase.Rnw
GGBase/inst/doc/ggbase.pdf
GGBase/inst/oldstuff
GGBase/inst/oldstuff/DESCRIPTION
GGBase/inst/oldstuff/GGBase.Rnw
GGBase/inst/oldstuff/NAMESPACE
GGBase/inst/oldstuff/makeSMLset.Rnw
GGBase/inst/oldstuff/manpages
GGBase/inst/oldstuff/manpages/GGBase-package.Rd
GGBase/inst/oldstuff/manpages/MAFfilter.Rd
GGBase/inst/oldstuff/manpages/SessionInfo-class.Rd
GGBase/inst/oldstuff/manpages/casting.Rd
GGBase/inst/oldstuff/manpages/featureFilter.Rd
GGBase/inst/oldstuff/manpages/getSS.Rd
GGBase/inst/oldstuff/manpages/gwSnpScreenResult-class.Rd
GGBase/inst/oldstuff/manpages/multiCisTestResult-class.Rd
GGBase/inst/oldstuff/manpages/plot_EvG-methods.Rd
GGBase/inst/oldstuff/manpages/smlSummary.Rd
GGBase/inst/oldstuff/newSNPloc.Rnw
GGBase/inst/oldstuff/smlSet.example.rda
GGBase/man
GGBase/man/MAFfilter.Rd
GGBase/man/clipPCs.Rd
GGBase/man/externalize.Rd
GGBase/man/make_smlSet.Rd
GGBase/man/plot_EvG.Rd
GGBase/man/rsid-class.Rd
GGBase/man/smlSet-class.Rd
GGBase/tests
GGBase/tests/MAFfilter.R
GGBase/tests/make.R
GGBase/tests/plot_EvG.R
GGBase/vignettes
GGBase/vignettes/ggbase.Rnw