Biocview "Infrastructure"

Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
A client for retrieving Bioconductor objects from AnnotationHub
A collection of pre-processing functions
A collection of pre-processing functions
A compilation of ENCODE metadata
A compilation of ENCODE metadata
A compilation of ENCODE metadata
A compilation of ENCODE metadata
A compilation of metadata from NCBI GEO
A compilation of metadata from NCBI GEO
A compilation of metadata from NCBI GEO
A compilation of metadata from NCBI SRA and tools
A compilation of metadata from NCBI SRA and tools
A compilation of metadata from NCBI SRA and tools
Add resources to ExperimentHub
Add resources to ExperimentHub
Add resources to ExperimentHub
Advanced analysis of microbial flow cytometry data
Affymetrix File Parsing SDK
Affymetrix File Parsing SDK
Affymetrix File Parsing SDK
Affymetrix GeneChip software compatibility
Affymetrix GeneChip software compatibility
A framework for rapid prototyping with binary data on disk
A framework for rapid prototyping with binary data on disk
A generic R plugin dispatcher for BASE
A mass spectrometry imaging toolbox for statistical analysis
A mass spectrometry imaging toolbox for statistical analysis
A matrix data storage object held in temporary files
A matrix data storage object held in temporary files
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analyze, manage and store genomic data
Analyze, manage and store genomic data
An extension of the bigmemory package with added safety, convenience, and a factor class
An extension of the bigmemory package with added safety, convenience, and a factor class
An R packaged zlib-1.2.5
An R packaged zlib-1.2.5
A package for importing and analyzing data from Roche's Genome Sequencer System
A package for importing and analyzing data from Roche's Genome Sequencer System
A package for secondary analysis of fusion products
A package for secondary analysis of fusion products
A RangedSummarizedExperiment with methods for copy number analysis
A RangedSummarizedExperiment with methods for copy number analysis
Base Classes for Storing Genomic Interaction Data
Base Classes for Storing Genomic Interaction Data
Base Classes for Storing Genomic Interaction Data
Base Functions and Classes for Mass Spectrometry and Proteomics
Base Functions and Classes for Mass Spectrometry and Proteomics
Base Functions and Classes for Mass Spectrometry and Proteomics
Basic graphic utilities for visualization of genomic data.
Basic graphic utilities for visualization of genomic data.
Big Data Management of Whole-genome Sequence Variant Calls
Big Data Management of Whole-genome Sequence Variant Calls
Big Data Management of Whole-genome Sequence Variant Calls
Biobase: Base functions for Bioconductor
Biobase: Base functions for Bioconductor
BiocCaseStudies: Support for the Case Studies Monograph
BiocCaseStudies: Support for the Case Studies Monograph
Bioconductor Algorithms for Big Data
Bioconductor facilities for parallel evaluation
Bioconductor facilities for parallel evaluation
Bioconductor facilities for parallel evaluation
Bioconductor-specific package checks
Bioconductor-specific package checks
Bioconductor-specific package checks
Bioconductor Web Interface
Bioconductor Web Interface
Bump Hunter
Bump Hunter
Bump Hunter
Bump Hunter
Categorized views of R package repositories
Categorized views of R package repositories
CGHbase: Base functions and classes for arrayCGH data analysis.
CGHbase: Base functions and classes for arrayCGH data analysis.
CGHbase: Base functions and classes for arrayCGH data analysis.
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Classes for high-throughput arrays supported by oligo and crlmm
Classes for high-throughput arrays supported by oligo and crlmm
Classes for high-throughput arrays supported by oligo and crlmm
Classes for high-throughput arrays supported by oligo and crlmm
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Client to access AnnotationHub resources
Client to access AnnotationHub resources
Client to access ExperimentHub resources
Client to access ExperimentHub resources
Client to access ExperimentHub resources
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Code for Building Annotation Database Packages
Code for Building Annotation Database Packages
Code for Building Annotation Database Packages
Compiling Bioconductor to Handle Each Matrix Type
Convenience functions for adding packages to the svn repository
Convenience functions for adding packages to the svn repository.
Convert Microarray Data Objects
Convert Microarray Data Objects
Create Classes and Functions for Managing Multiple Assays on Sets of Samples
Creates an interactive tcltk widget
Creates an interactive tcltk widget
Cross-target analysis of small molecule bioactivity
Cross-target analysis of small molecule bioactivity
Cross-target analysis of small molecule bioactivity
Cross-target analysis of small molecule bioactivity
Data and functions for dealing with microRNAs
Data and functions for dealing with microRNAs
Data Management API for epiviz interactive visualization app
Data Management API for epiviz interactive visualization app
Data Management API for epiviz interactive visualization app
DBI to construct MeSH-related package from sqlite file
DBI to construct MeSH-related package from sqlite file
Delayed operations on array-like objects
Delayed operations on array-like objects
Differential Coverage package
Distributed computing by file or by range
Distributed computing by file or by range
Distributed computing by file or by range
Dynamic document tools
Dynamic document tools
Easy Handling of and Access to Files Organized in Structured Directories
Easy Handling of and Access to Files Organized in Structured Directories
Enabling stream processing of large files
Enabling stream processing of large files
Exploration of marker-gene sequence taxonomic annotations
Exploration of marker-gene sequence taxonomic annotations
Exploration of marker-gene sequence taxonomic annotations
Expose R functions as web services through Java/Axis/Apache
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Facilities for Filtering Bioconductor Annotation Resources
Facilities for Filtering Bioconductor Annotation Resources
Facilities for Filtering Bioconductor Annotation Resources
Facilities for Filtering Bioconductor Annotation Resources
Facilities for Filtering Bioconductor Annotation Resources
flowBeads: Analysis of flow bead data
flowBeads: Analysis of flow bead data
flowBeads: Analysis of flow bead data
flowCore: Basic structures for flow cytometry data
flowCore: Basic structures for flow cytometry data
FlowRepository R Interface
FlowRepository R Interface
Generic and Biological Sequences
Generic and Biological Sequences
Genometric Correlation package
Genomic Visualizations in R
Genomic Visualizations in R
Genomic Visualizations in R
GGBase infrastructure for genetics of gene expression package GGtools
GGBase infrastructure for genetics of gene expression package GGtools
GMQL function
HDF5 back end for DelayedArray objects
HDF5 back end for DelayedArray objects
HDF5 interface to R
HDF5 interface to R
HDF5 interface to R
hdf5 library as an R package
hdf5 library as an R package
High throughput prioritized acquisition and processing of tandem mass spectra
High-Throughput Sequence Analysis using the Aroma Framework
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data
Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data
Infrastructure for Biostrings-based genome data packages
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Infrastructure for manipulating intervals on sequences
Infrastructure for manipulating intervals on sequences
Infrastructure to work with genomewide position-specific scores
Infrastructure to work with genomewide position-specific scores
Infrastructure to work with genomewide position-specific scores
Install/Update Bioconductor and CRAN Packages
Install/Update Bioconductor, CRAN, and github Packages
Install/Update Bioconductor, CRAN, and github Packages
Integrated Interpretation of Genes
Integrated Interpretation of Genes
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Interactive visualization and manipulation of nested networks
Interactive visualization and manipulation of nested networks
Interface for Popular Multiple Sequence Alignment Tools
Interface to the Basic Local Alignment Search Tool (BLAST)
Interface to the RDP Classifier
Interface to the RDP Classifier
Investigates Allele Specific Expression
Investigates Allele Specific Expression
Investigates Allele Specific Expression
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Make an R function available in the Galaxy web platform
Make an R function available in the Galaxy web platform
Make an R function available in the Galaxy web platform
Make an R function available in the Galaxy web platform
Make an R function available in the Galaxy web platform
Make an R function available in the Galaxy web platform
Manipulating and exploring protein and proteomics data
Manipulating and exploring protein and proteomics data
Manipulating and exploring protein and proteomics data
Methods for accessing online The Cancer Genome Atlas (TCGA) data
Methods for accessing online The Cancer Genome Atlas (TCGA) data
Methods for reading CNAG files
Methods for reading CNAG files
Methods for reading dChip files
Methods for Reading dChip Files
Methods for Reading dChip Files
Methods that apply to rows and columns of a matrix
Microarray Data related methods that utlize BufferedMatrix objects
Microarray Data related methods that utlize BufferedMatrix objects
mimager: The Microarray Imager
mimager: The Microarray Imager
mimager: The Microarray Imager
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Model-View-Controller (MVC) Classes
Model-View-Controller (MVC) Classes
Model-View-Controller (MVC) Classes That Use Biobase
Model-View-Controller (MVC) Classes That Use Biobase
multivariate outlier detection for expression array QA
multivariate outlier detection for expression array QA
NPMLE for Censored and Truncated Data
NPMLE for Censored and Truncated Data
Objective Assessment of Copy-Number Estimates
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Operations on genomic intervals
Operations on genomic intervals
Optional Type Specification Prototype
Optional Type Specification Prototype
Package Dependency Tools
Package Dependency Tools
Package for CTDbase data query, visualization and downstream analysis.
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Parallel queries distributed by file or by range
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
Parsing GenBank files into semantically useful objects
Parsing GenBank files into semantically useful objects
Parsing Illumina Microarray Output Files
Parsing Illumina Microarray Output Files
Parsing Illumina Microarray Output Files
Platform Design Information Package Builder
Platform Design Information Package Builder
Platform Design Information Package Builder
Platform Design Information Package Builder
Post-normalization of total copy numbers
Post-normalization of total copy numbers
Presence-Absence Calls from Negative Strand Matching Probesets
Presence-Absence Calls from Negative Strand Matching Probesets
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Quality control for flow cytometry
Quality control for flow cytometry
Quality Control of Gated Flow Cytometry Experiments
Quality Control of Gated Flow Cytometry Experiments
R based tk widgets
R based tk widgets
Representation and manipulation of genomic intervals and variables defined along a genome
Representation and manipulation of genomic intervals and variables defined along a genome
Representation and manipulation of genomic intervals and variables defined along a genome
Representation and Manipulation of Genomic Tuples
Representation and Manipulation of Genomic Tuples
Representation and Manipulation of Genomic Tuples
Representation and manipulation of short genomic alignments
Representation and manipulation of short genomic alignments
Representation and manpulation of external sequences
Representation and manpulation of external sequences
Representation of Sparse Experiments and Assays Across Samples
Representation of Sparse Experiments and Assays Across Samples
Representation of Sparse Experiments and Assays Across Samples
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
R Interface to CoreArray Genomic Data Structure (GDS) Files
R Interface to CoreArray Genomic Data Structure (GDS) Files
R Interface to CoreArray Genomic Data Structure (GDS) Files
R Interface to epiviz web app
R Interface to epiviz web app
R Interface to epiviz web app
R Interface to epiviz web app
R Interface to epiviz web app
R interface to PSI-MI 2.5 files
R interface to PSI-MI 2.5 files
R interface to PSI-MI 2.5 files
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
R interface to the pepXML standard
R interface to the pepXML standard
R Interface to UniProt Web Services
R Interface to UniProt Web Services
RNA-Seq Utilities
RNA-Seq Utilities
R objects for common work flow language representation
R package for handling genomic interaction data
R package for handling genomic interaction data
R package for handling genomic interaction data
rRemoteSDSU Web Application
R SDK for BaseSpace RESTful API
R SDK for BaseSpace RESTful API
Run Epiviz Interactive Genomic Data Visualization App within R
Run Epiviz Interactive Genomic Data Visualization App within R
Run Epiviz Interactive Genomic Data Visualization App within R
R utilities for rabix.
S4 Classes for Single Cell Data
S4 Classes for Single Cell Data
S4 Classes for Single Cell Data
S4 generic functions for Bioconductor
S4 generic functions for Bioconductor
S4 generic functions for Bioconductor
S4 generic functions for Bioconductor
S4 generic functions for Bioconductor
S4 generic functions for Bioconductor proteomics infrastructure
S4 generic functions for Bioconductor proteomics infrastructure
S4 generic functions for Bioconductor proteomics infrastructure
S4 implementation of vectors and lists
S4 implementation of vectors and lists
Similarity measures for chemical compounds
Similarity measures for chemical compounds
Simulation of ChIP-seq experiments
Simulation of ChIP-seq experiments
Single-cell analysis toolkit for gene expression data in R
Single-cell analysis toolkit for gene expression data in R
Single-cell analysis toolkit for gene expression data in R
Single-Cell RNA-Seq Utilities
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software to enable the smooth interfacing of different database packages
Software to enable the smooth interfacing of different database packages
splicegear
splicegear
Statistical tools and data structures for plate-based flow cytometry
Statistical tools and data structures for plate-based flow cytometry
String objects representing biological sequences, and matching algorithms
String objects representing biological sequences, and matching algorithms
structured corruption of affymetrix cel file data
structured corruption of affymetrix cel file data
SummarizedExperiment container
SummarizedExperiment container
SummarizedExperiment container
Symphony integer linear programming solver in R
Symphony integer linear programming solver in R
Synchronious locking mechanisms
systemPipeRdata: NGS workflow templates and sample data
systemPipeR: NGS workflow and report generation environment
systemPipeR: NGS workflow and report generation environment
The Omegahat interface for R and Java
Tools and extensions for processing Sweave documents
Tools and extensions for processing Sweave documents
Tools for making and manipulating transcript centric annotations
Tools for making and manipulating transcript centric annotations
Tools for parsing Affymetrix data files
Tools for parsing Affymetrix data files
Tools for visualizing genomics data
Tools for visualizing genomics data
Tools for visualizing genomics data
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells.
Transcription Factors Association Rules Miner
Utilities for flow cytometry
Utilities for flow cytometry
Visualization for flow cytometry
Visualization for flow cytometry
Visualization tools for gene fusions
Visualization tools for gene fusions
Visualization tools for gene fusions
Visualization tools for genomic data
Visualization tools for genomic data
Visualize Cytometry data with ggplot
Visualize Cytometry data with ggplot
WebSocket server infrastructure for epivizr apps and packages
WebSocket server infrastructure for epivizr apps and packages
WebSocket server infrastructure for epivizr apps and packages
Working with Illumina Basecalling and Demultiplexing input and output files
Working with Illumina Basecalling and Demultiplexing input and output files
Working with Illumina Basecalling and Demultiplexing input and output files