HenrikBengtsson/affxparser: Affymetrix File Parsing SDK

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Getting started

Package details

AuthorHenrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Bioconductor views DataImport Infrastructure Microarray OneChannel ProprietaryPlatforms
MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
LicenseLGPL (>= 2)
URL https://github.com/HenrikBengtsson/affxparser
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
HenrikBengtsson/affxparser documentation built on April 28, 2023, 10:11 a.m.