VCFArray: Representing on-disk / remote VCF files as array-like objects

VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.

Package details

AuthorQian Liu [aut, cre], Martin Morgan [aut]
Bioconductor views DataRepresentation Infrastructure Sequencing VariantAnnotation
MaintainerQian Liu <[email protected]>
LicenseGPL-3
Version1.2.0
URL https://github.com/Liubuntu/VCFArray
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("VCFArray")

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VCFArray documentation built on Oct. 31, 2019, 2:12 a.m.