Biocview "DataRepresentation"

A Bioconductor package for accessing GA4GH API data servers
A Bioconductor package for accessing GA4GH API data servers
A Bioconductor package for accessing GA4GH API data servers
A framework for sharing interactive data and plots from R through the web
A framework for sharing interactive data and plots from R through the web.
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analysis of Agilent Microarray Data [draft]
Analysis of Illumina microarray data [A DRAFT - TRUE]
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
An extension of the bigmemory package with added safety, convenience, and a factor class
An extension of the bigmemory package with added safety, convenience, and a factor class
An R package for RNA visualization and analysis
An R package for RNA visualization and analysis
A package for importing and analyzing data from Roche's Genome Sequencer System
A package for importing and analyzing data from Roche's Genome Sequencer System
A RangedSummarizedExperiment with methods for copy number analysis
A RangedSummarizedExperiment with methods for copy number analysis
A search tool for single cell RNA-seq data by gene lists
A search tool for single cell RNA-seq data by gene lists
A Thin Wrapper around the ImmuneSpace Database
A Thin Wrapper around the ImmuneSpace Database
A Thin Wrapper around the ImmuneSpace Database
A tool for unsupervised projection of single cell RNA-seq data
A tool for unsupervised projection of single cell RNA-seq data
A tool for unsupervised projection of single cell RNA-seq data
Base Classes for Storing Genomic Interaction Data
Base Classes for Storing Genomic Interaction Data
Base Classes for Storing Genomic Interaction Data
Base package for enabling powerful shiny web displays of Bioconductor objects
Base package for enabling powerful shiny web displays of Bioconductor objects
Big Data Management of Whole-genome Sequence Variant Calls
Big Data Management of Whole-genome Sequence Variant Calls
Big Data Management of Whole-genome Sequence Variant Calls
Bioconductor Algorithms for Big Data
C++ infrastructure for representing and interacting with the gated cytometry
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
Compiling Bioconductor to Handle Each Matrix Type
Compiling Bioconductor to Handle Each Matrix Type
Comprehensive analysis of transciptome data
Comprehensive analysis of transciptome data
Convenience package for solving some liftover challenges
Convenience package for solving some liftover challenges
Convert the GatingSet from Boost serialization to protocol buffer format
Copy-Number Analysis of Large Microarray Data Sets
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Create Classes and Functions for Managing Multiple Assays on Sets of Samples
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
DeepBlueR
DeepBlueR
DeepBlueR
DeepBlueR
Delayed?Array with remote, e.g., HDF5Server or BigQuery, back end
Delayed?Array with remote, e.g., HDF5Server or BigQuery, back end
Delayed operations on array-like objects
Delayed operations on array-like objects
Delayed operations on array-like objects
Differential Coverage package
Differential Enrichment analysis of Proteomics data
Differential Enrichment analysis of Proteomics data
Easy Handling of and Access to Files Organized in Structured Directories
Easy Handling of and Access to Files Organized in Structured Directories
Efficient compression and analysis of Hi-C Data
Efficient manipulation of biological strings
Efficient manipulation of biological strings
Efficient Manipulation of Sparse Experiment Data
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Extended project Morpheus with Bioconductor methods
Extended project Morpheus with Bioconductor methods
flexible pipelines for secretome prediction
flowPlots: analysis plots and data class for gated flow cytometry data
flowPlots: analysis plots and data class for gated flow cytometry data
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
GatingML interface for openCyto
GatingML interface for openCyto
GatingML interface for openCyto
Gene Expression Atlas query and gene set enrichment package.
Gene Expression Atlas query and gene set enrichment package.
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Generic and Biological Sequences
Generic and Biological Sequences
Genometric Correlation package
Genomic Visualizations in R
Genomic Visualizations in R
Genomic Visualizations in R
Global visualization tool of genomic data
Global visualization tool of genomic data
HDF5 back end for DelayedArray objects
HDF5 back end for DelayedArray objects
Hierarchical Gating Pipeline for flow cytometry data
Hierarchical Gating Pipeline for flow cytometry data
High-Throughput Sequence Analysis using the Aroma Framework
Identifying differential DNA loops from chromatin topology data
Identifying differential DNA loops from chromatin topology data
Identifying differential DNA loops from chromatin topology data
Implementation of MultiDataSet and ResultSet
Implementation of MultiDataSet and ResultSet
Implementation of MultiDataSet, ResultSet and MethylationSet
Infrastructure for Biostrings-based genome data packages
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Infrastructure for manipulating intervals on sequences
Infrastructure for manipulating intervals on sequences
Infrastructure for manipulating intervals on sequences
Infrastructure for representing and interacting with the gated cytometry
Infrastructure for representing and interacting with the gated cytometry
Integrated Interpretation of Genes
Integrated Interpretation of Genes
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Interactive Multi-Omics Cancers Data Visualization and Analysis
Interactive Multi-Omics Cancers Data Visualization and Analysis
Interactive Multi-Omics Cancers Data Visualization and Analysis
Interactive visualization and manipulation of nested networks
Interactive visualization and manipulation of nested networks
Manipulating and exploring protein and proteomics data
Manipulating and exploring protein and proteomics data
Manipulating and exploring protein and proteomics data
Microbial Comparative Genomics in R
Microbial Comparative Genomics in R
Microbial Comparative Genomics in R
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Ontology traversal and search
Ontology traversal and search
OSAT: Optimal Sample Assignment Tool
OSAT: Optimal Sample Assignment Tool
Package for CTDbase data query, visualization and downstream analysis.
Package for enabling powerful shiny web displays of Bioconductor objects
Package for enabling powerful shiny web displays of Bioconductor objects
Parses BioPax files and represents them in R
Parses BioPax files and represents them in R
Parses BioPax files and represents them in R
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Representation and manipulation of external sequences
Representation and Manipulation of Genomic Tuples
Representation and Manipulation of Genomic Tuples
Representation and Manipulation of Genomic Tuples
Representation and manpulation of external sequences
Representation of Sparse Experiments and Assays Across Samples
Representation of Sparse Experiments and Assays Across Samples
Representation of Sparse Experiments and Assays Across Samples
R framework for exploration and analysis of respirometry data
R framework for exploration and analysis of respirometry data
R framework for exploration and analysis of respirometry data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RNA-Seq Utilities
RNA-Seq Utilities
RNA-Seq Utilities
R objects for common work flow language representation
Routines that don't belong to the core flow packages yet.
R package for handling genomic interaction data
R package for handling genomic interaction data
R package for handling genomic interaction data
R SDK for BaseSpace RESTful API
R SDK for BaseSpace RESTful API
R utilities for rabix.
S4 Classes for Single Cell Data
S4 Classes for Single Cell Data
S4 Classes for Single Cell Data
S4 Classes for Single Cell Data
S4 implementation of vector-like and list-like objects
S4 implementation of vector-like and list-like objects
S4 implementation of vectors and lists
Single-cell analysis toolkit for gene expression data in R
Single-cell analysis toolkit for gene expression data in R
Single-cell analysis toolkit for gene expression data in R
Single-Cell Consensus Clustering
Single-Cell Consensus Clustering
Single-Cell Consensus Clustering
Single-Cell RNA-Seq Utilities
Single-Cell RNA-Seq Utilities
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software for the integration of multi-omics experiments in Bioconductor
Software infrastructure for efficient representation of full genomes and their SNPs
Software infrastructure for efficient representation of full genomes and their SNPs
StatePaintR: a tool for creating and documenting reproducible chromatin state annotations from StateHub
StatePaintR: a tool for creating and documenting reproducible chromatin state annotations from StateHub
Stoichiometry analysis of label-free proteomics data
String objects representing biological sequences, and matching algorithms
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
The Cancer Genome Atlas Data Integration
The Cancer Genome Atlas Data Integration
The Cancer Genome Atlas Data Integration
Tools for counting and visualising mutations in a target location
Tools for counting and visualising mutations in a target location
Tools for counting and visualising mutations in a target location
Tools for counting and visualising mutations in a target location
Tools for making reports in various formats
Tools for making reports in various formats
Tools for making reports in various formats
Tools for visualizing genomics data
Tools for visualizing genomics data
Tools for visualizing genomics data
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Utilities for manipulating chromosome and other 'seqname' identifiers
Utilities for manipulating chromosome and other 'seqname' identifiers
Utilities for manipulating chromosome and other 'seqname' identifiers
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualizations of expressionSet Bioconductor object
Visualizations of expressionSet Bioconductor object
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
You Only Lookup One (small part of an otherwise large matrix)