GDSArray: Representing GDS files as array-like objects

GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.

Package details

AuthorQian Liu [aut, cre], Martin Morgan [aut], Hervé Pagès [aut], Xiuwen Zheng [aut]
Bioconductor views DataRepresentation GenotypingArray Infrastructure Sequencing
MaintainerQian Liu <qliu7@buffalo.edu>
LicenseGPL-3
Version1.10.1
URL https://github.com/Bioconductor/GDSArray
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GDSArray")

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GDSArray documentation built on April 2, 2021, 6 p.m.