bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author
Karim Mezhoud [aut, cre]
Date of publication
None
Maintainer
Karim Mezhoud <kmezhoud@gmail.com>
License
AGPL-3 | file LICENSE
Version
1.2.0
URLs

View on Bioconductor

Man pages

attriColorGene
Attribute Color to Gene
attriColorValue
Attribute Color to Value
attriColorVector
Attribute color to a vector of numeric values
attriShape2Gene
Attribute shape to nodes
attriShape2Node
Attributes shape to Nodes
bioCancer
Launch bioCancer with default browser
checkDimensions
Chech wich Cases and genetic profiles are available for every...
coffeewheel
This is an htmlwidgets-based visualization tool for...
coffeewheelOutput
Widget output function for use in Shiny
displayTable
Display dataframe in table using DT package
Edges_Diseases_obj
get Edges dataframe for Gene/Disease association from...
getFreqMutData
get mutation frequency
getListProfData
get list of data frame with profiles data (CNA,mRNA,...
grepRef
search and get genetic profiles (CNA,mRNA, Methylation,...
metabologram
Circular plot of hierarchital data of genetic profile.
Mutation_obj
Atribute mutation frequency to nodes
Node_df_FreqIn
Attributes size to Nodes depending on number of interaction
Node_Diseases_obj
Attributes color and shape to Nodes of Diseases
Node_obj_CNA_ProfData
Attribute CNA data to node border
Node_obj_FreqIn
Attribute interaction frequency to node size
Node_obj_Met_ProfData
Attribute gene Methylation to Nodes
Node_obj_mRNA_Classifier
Atrribute genes expression to color nodes
renderCoffeewheel
Widget render function for use in Shiny
reStrColorGene
Restructure the list of color attributed to the genes in...
reStrDimension
Restructure the list of color attributed to the genes in...
reStrDisease
Restructure the list of color attributed to the genes in...
sampleWheelData
Sample data for wheel initialization
Studies_obj
get object for grViz. Link Studies to genes
UnifyRowNames
Unify row names in data frame with the same order of gene...
whichGeneList
Verify which gene list is selected

Files in this package

bioCancer/DESCRIPTION
bioCancer/LICENSE
bioCancer/NAMESPACE
bioCancer/NEWS
bioCancer/R
bioCancer/R/Enrich.R
bioCancer/R/Portal.R
bioCancer/R/Reactome.R
bioCancer/R/aaa.R
bioCancer/R/bioCancer.R
bioCancer/R/coffeewheel.R
bioCancer/R/dyNetwork.R
bioCancer/R/getListProfData.R
bioCancer/R/metabologram.R
bioCancer/R/zzz.R
bioCancer/README.md
bioCancer/bioCancer.Rproj
bioCancer/build
bioCancer/build/vignette.rds
bioCancer/inst
bioCancer/inst/Rbis
bioCancer/inst/Rbis/cbindna.R
bioCancer/inst/Rbis/combine.R
bioCancer/inst/Rbis/compare_means.R
bioCancer/inst/Rbis/compare_props.R
bioCancer/inst/Rbis/conjoint.R
bioCancer/inst/Rbis/conjoint_profiles.R
bioCancer/inst/Rbis/correlation.R
bioCancer/inst/Rbis/cross_tabs.R
bioCancer/inst/Rbis/dtree.R
bioCancer/inst/Rbis/explore.R
bioCancer/inst/Rbis/full_factor.R
bioCancer/inst/Rbis/glm_reg.R
bioCancer/inst/Rbis/goodness.R
bioCancer/inst/Rbis/hier_clus.R
bioCancer/inst/Rbis/kmeans_clus.R
bioCancer/inst/Rbis/mds.R
bioCancer/inst/Rbis/performance.R
bioCancer/inst/Rbis/pivotr.R
bioCancer/inst/Rbis/pmap.R
bioCancer/inst/Rbis/pre_factor.R
bioCancer/inst/Rbis/prob_calc.R
bioCancer/inst/Rbis/radiant.R
bioCancer/inst/Rbis/rbindna.R
bioCancer/inst/Rbis/regression.R
bioCancer/inst/Rbis/rfm.R
bioCancer/inst/Rbis/sample_size.R
bioCancer/inst/Rbis/sampling.R
bioCancer/inst/Rbis/simulater.R
bioCancer/inst/Rbis/single_mean.R
bioCancer/inst/Rbis/single_prop.R
bioCancer/inst/Rbis/transform.R
bioCancer/inst/Rbis/visualize.R
bioCancer/inst/base
bioCancer/inst/base/bioCancerInit.R
bioCancer/inst/base/data
bioCancer/inst/base/data/Breast.rda
bioCancer/inst/base/data/GeneList
bioCancer/inst/base/data/GeneList/102.txt
bioCancer/inst/base/data/GeneList/1021.txt
bioCancer/inst/base/data/GeneList/223.txt
bioCancer/inst/base/data/GeneList/555.txt
bioCancer/inst/base/data/GeneList/73.txt
bioCancer/inst/base/data/GeneList/DNA_damage_Response.txt
bioCancer/inst/base/data/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
bioCancer/inst/base/data/GeneList/INvasion_and_Metastasis.txt
bioCancer/inst/base/data/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
bioCancer/inst/base/data/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
bioCancer/inst/base/data/diamonds.rda
bioCancer/inst/base/data/epiGenomics.rda
bioCancer/inst/base/data/satisfaction.rda
bioCancer/inst/base/data/superheroes.rda
bioCancer/inst/base/data/toothpaste.rda
bioCancer/inst/base/data/xmRNA.rda
bioCancer/inst/base/global.R
bioCancer/inst/base/init.R
bioCancer/inst/base/server_bkp.R
bioCancer/inst/base/tools
bioCancer/inst/base/tools/app
bioCancer/inst/base/tools/app/about.md
bioCancer/inst/base/tools/app/code.R
bioCancer/inst/base/tools/app/help.R
bioCancer/inst/base/tools/app/report.R
bioCancer/inst/base/tools/app/state.R
bioCancer/inst/base/tools/app/stop.R
bioCancer/inst/base/tools/app/tutorials.md
bioCancer/inst/base/tools/data
bioCancer/inst/base/tools/data/Circomics_ui.R
bioCancer/inst/base/tools/data/Classifier.R
bioCancer/inst/base/tools/data/Classifier_ui.R
bioCancer/inst/base/tools/data/ClinicalData.R
bioCancer/inst/base/tools/data/ClinicalData_ui.R
bioCancer/inst/base/tools/data/DisGeNet.R
bioCancer/inst/base/tools/data/MutData.R
bioCancer/inst/base/tools/data/MutData_ui.R
bioCancer/inst/base/tools/data/Network.R
bioCancer/inst/base/tools/data/Network3D.R
bioCancer/inst/base/tools/data/NetworkD3_ui.R
bioCancer/inst/base/tools/data/Network_ui.R
bioCancer/inst/base/tools/data/ProfData.R
bioCancer/inst/base/tools/data/ProfData_ui.R
bioCancer/inst/base/tools/data/Reactome.R
bioCancer/inst/base/tools/data/Reactome_ui.R
bioCancer/inst/base/tools/data/chooser.R
bioCancer/inst/base/tools/data/combine_ui.R
bioCancer/inst/base/tools/data/explore_ui.R
bioCancer/inst/base/tools/data/getCircomics.R
bioCancer/inst/base/tools/data/getMegaProfData.R
bioCancer/inst/base/tools/data/getNetClassifier.R
bioCancer/inst/base/tools/data/getReactomeFUN.R
bioCancer/inst/base/tools/data/manage.R
bioCancer/inst/base/tools/data/manage_ui.R
bioCancer/inst/base/tools/data/pivotr_ui.R
bioCancer/inst/base/tools/data/transform_ui.R
bioCancer/inst/base/tools/data/ui_data.R
bioCancer/inst/base/tools/data/view.R
bioCancer/inst/base/tools/data/visualize_ui.R
bioCancer/inst/base/tools/help
bioCancer/inst/base/tools/help/Circomics.md
bioCancer/inst/base/tools/help/Classifier.md
bioCancer/inst/base/tools/help/Clinical.md
bioCancer/inst/base/tools/help/Mutation.md
bioCancer/inst/base/tools/help/Profiles.md
bioCancer/inst/base/tools/help/Reactome.md
bioCancer/inst/base/tools/help/Studies.md
bioCancer/inst/base/tools/help/code.md
bioCancer/inst/base/tools/help/combine.Rmd
bioCancer/inst/base/tools/help/combine.md
bioCancer/inst/base/tools/help/explore.md
bioCancer/inst/base/tools/help/figures
bioCancer/inst/base/tools/help/figures/80x15.png
bioCancer/inst/base/tools/help/figures/Circomics.png
bioCancer/inst/base/tools/help/figures/Circomics_Availibility.png
bioCancer/inst/base/tools/help/figures/Classifier_Table.png
bioCancer/inst/base/tools/help/figures/Plot_enrich.png
bioCancer/inst/base/tools/help/figures/ReactomeLegend.png
bioCancer/inst/base/tools/help/figures/Reactome_Network.png
bioCancer/inst/base/tools/help/figures/anti_join.png
bioCancer/inst/base/tools/help/figures/boxplot.png
bioCancer/inst/base/tools/help/figures/combine_avengers_superheroes.png
bioCancer/inst/base/tools/help/figures/compareClusterDO.png
bioCancer/inst/base/tools/help/figures/compareClusterGO.png
bioCancer/inst/base/tools/help/figures/compareClusterKEGG.png
bioCancer/inst/base/tools/help/figures/explore.png
bioCancer/inst/base/tools/help/figures/full_join.png
bioCancer/inst/base/tools/help/figures/inner_join.png
bioCancer/inst/base/tools/help/figures/join_publishers_superheroes.png
bioCancer/inst/base/tools/help/figures/join_superheroes_publishers.png
bioCancer/inst/base/tools/help/figures/left_join.png
bioCancer/inst/base/tools/help/figures/merge_heroes_publishers.png
bioCancer/inst/base/tools/help/figures/merge_publishers_heroes.png
bioCancer/inst/base/tools/help/figures/outer_join.png
bioCancer/inst/base/tools/help/figures/pivotr.png
bioCancer/inst/base/tools/help/figures/right_join.png
bioCancer/inst/base/tools/help/manage.md
bioCancer/inst/base/tools/help/pivotr.md
bioCancer/inst/base/tools/help/quit.md
bioCancer/inst/base/tools/help/report.md
bioCancer/inst/base/tools/help/state.md
bioCancer/inst/base/tools/help/transform.Rmd
bioCancer/inst/base/tools/help/transform.md
bioCancer/inst/base/tools/help/view.Rmd
bioCancer/inst/base/tools/help/view.md
bioCancer/inst/base/tools/help/visualize.md
bioCancer/inst/base/ui_bkp.R
bioCancer/inst/base/www
bioCancer/inst/base/www/bootstrap.min.css
bioCancer/inst/base/www/imgs
bioCancer/inst/base/www/imgs/80x15.png
bioCancer/inst/base/www/imgs/ReactomeLegend.png
bioCancer/inst/base/www/imgs/drawing.svg
bioCancer/inst/base/www/imgs/icon.png
bioCancer/inst/base/www/imgs/icon_copy.png
bioCancer/inst/base/www/js
bioCancer/inst/base/www/js/draggable_modal.js
bioCancer/inst/base/www/js/jquery-ui.custom.min.js
bioCancer/inst/base/www/js/math_reset.js
bioCancer/inst/base/www/js/returnTextAreaBinding.js
bioCancer/inst/base/www/js/returnTextInputBinding.js
bioCancer/inst/base/www/js/session.js
bioCancer/inst/base/www/js/video_reset.js
bioCancer/inst/base/www/rmarkdown
bioCancer/inst/base/www/rmarkdown/DiagrammeR-binding-0.7
bioCancer/inst/base/www/rmarkdown/DiagrammeR-binding-0.7/DiagrammeR.js
bioCancer/inst/base/www/rmarkdown/DiagrammeR-styles-0.2
bioCancer/inst/base/www/rmarkdown/DiagrammeR-styles-0.2/styles.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/bootstrap-theme.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/bootstrap-theme.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/bootstrap.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/bootstrap.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/cerulean.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/cosmo.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/flatly.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/Lato.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/LatoBold.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/LatoItalic.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/NewsCycle.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/NewsCycleBold.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/OpenSans.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/OpenSansBold.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/OpenSansBoldItalic.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/OpenSansItalic.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/Raleway.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/RalewayBold.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/SourceSansPro.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/SourceSansProBold.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/SourceSansProLight.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/Ubuntu.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/journal.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/readable.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/spacelab.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/united.min.css
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.eot
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.svg
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.woff
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/js
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/js/bootstrap.js
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/js/bootstrap.min.js
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim/html5shiv.min.js
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim/respond.min.js
bioCancer/inst/base/www/rmarkdown/chromatography-0.1
bioCancer/inst/base/www/rmarkdown/chromatography-0.1/LICENSE
bioCancer/inst/base/www/rmarkdown/chromatography-0.1/chromatography.js
bioCancer/inst/base/www/rmarkdown/d3-3.3.8
bioCancer/inst/base/www/rmarkdown/d3-3.3.8/LICENSE
bioCancer/inst/base/www/rmarkdown/d3-3.3.8/d3.min.js
bioCancer/inst/base/www/rmarkdown/dagre-0.4.0
bioCancer/inst/base/www/rmarkdown/dagre-0.4.0/LICENSE
bioCancer/inst/base/www/rmarkdown/dagre-0.4.0/dagre-d3.min.js
bioCancer/inst/base/www/rmarkdown/highlight
bioCancer/inst/base/www/rmarkdown/highlight/default.css
bioCancer/inst/base/www/rmarkdown/highlight/highlight.js
bioCancer/inst/base/www/rmarkdown/highlight/textmate.css
bioCancer/inst/base/www/rmarkdown/htmlwidgets-0.5
bioCancer/inst/base/www/rmarkdown/htmlwidgets-0.5/htmlwidgets.js
bioCancer/inst/base/www/rmarkdown/includes.html
bioCancer/inst/base/www/rmarkdown/jquery-1.11.0
bioCancer/inst/base/www/rmarkdown/jquery-1.11.0/jquery.min.js
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/LICENSE
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist/mermaid.css
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist/mermaid.slim.min.js
bioCancer/inst/base/www/style.css
bioCancer/inst/bioCancer
bioCancer/inst/bioCancer/bioCancerInit.R
bioCancer/inst/bioCancer/data
bioCancer/inst/bioCancer/data/Classifier.rda
bioCancer/inst/bioCancer/data/ClinicalData_gbm_tcga_pub_CNA_mRNA.rda
bioCancer/inst/bioCancer/data/ClinicalData_ucec_tcga_pub.rda
bioCancer/inst/bioCancer/data/GeneList
bioCancer/inst/bioCancer/data/GeneList/102.txt
bioCancer/inst/bioCancer/data/GeneList/1021.txt
bioCancer/inst/bioCancer/data/GeneList/223.txt
bioCancer/inst/bioCancer/data/GeneList/555.txt
bioCancer/inst/bioCancer/data/GeneList/73.txt
bioCancer/inst/bioCancer/data/GeneList/DNA_damage_Response.txt
bioCancer/inst/bioCancer/data/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
bioCancer/inst/bioCancer/data/GeneList/INvasion_and_Metastasis.txt
bioCancer/inst/bioCancer/data/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
bioCancer/inst/bioCancer/data/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
bioCancer/inst/bioCancer/data/epiGenomics.rda
bioCancer/inst/bioCancer/data/orangejuice.rda
bioCancer/inst/bioCancer/global.R
bioCancer/inst/bioCancer/rsconnect
bioCancer/inst/bioCancer/rsconnect/shinyapps.io
bioCancer/inst/bioCancer/rsconnect/shinyapps.io/kmezhoud
bioCancer/inst/bioCancer/rsconnect/shinyapps.io/kmezhoud/bioCancer.dcf
bioCancer/inst/bioCancer/server.R
bioCancer/inst/bioCancer/tools
bioCancer/inst/bioCancer/tools/analysis
bioCancer/inst/bioCancer/tools/analysis/conjoint_profiles_ui.R
bioCancer/inst/bioCancer/tools/analysis/conjoint_ui.R
bioCancer/inst/bioCancer/tools/analysis/full_factor_ui.R
bioCancer/inst/bioCancer/tools/analysis/hier_clus_ui.R
bioCancer/inst/bioCancer/tools/analysis/kmeans_clus_ui.R
bioCancer/inst/bioCancer/tools/analysis/mds_ui.R
bioCancer/inst/bioCancer/tools/analysis/pmap_ui.R
bioCancer/inst/bioCancer/tools/analysis/pre_factor_ui.R
bioCancer/inst/bioCancer/tools/help
bioCancer/inst/bioCancer/tools/help/conjoint.md
bioCancer/inst/bioCancer/tools/help/conjoint_profiles.md
bioCancer/inst/bioCancer/tools/help/figures
bioCancer/inst/bioCancer/tools/help/figures/conjoint_carpet_design.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_corr_mat.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_plot.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_profiles.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_summary.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_plot.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_plot_rotation.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_summary.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_summary_shopping.png
bioCancer/inst/bioCancer/tools/help/figures/hier_clus_dendro.png
bioCancer/inst/bioCancer/tools/help/figures/hier_clus_scree.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_cross_tabs_plot.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_cross_tabs_summary.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_plot.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_summary.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_transform_recode.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot_flip.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot_tpbrands.png
bioCancer/inst/bioCancer/tools/help/figures/mds_summary.png
bioCancer/inst/bioCancer/tools/help/figures/mds_summary_tpbrands.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_all.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_brands.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_brands_attr.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_summary.png
bioCancer/inst/bioCancer/tools/help/figures/pre_factor_summary_plot.png
bioCancer/inst/bioCancer/tools/help/full_factor.md
bioCancer/inst/bioCancer/tools/help/hier_clus.md
bioCancer/inst/bioCancer/tools/help/kmeans_clus.md
bioCancer/inst/bioCancer/tools/help/mds.md
bioCancer/inst/bioCancer/tools/help/pmap.md
bioCancer/inst/bioCancer/tools/help/pre_factor.md
bioCancer/inst/bioCancer/ui.R
bioCancer/inst/doc
bioCancer/inst/doc/bioCancer.R
bioCancer/inst/doc/bioCancer.Rmd
bioCancer/inst/doc/bioCancer.html
bioCancer/inst/extdata
bioCancer/inst/extdata/ReactomeFI2015.RDS
bioCancer/inst/extdata/imgs
bioCancer/inst/extdata/imgs/ReactomeLegend.png
bioCancer/inst/extdata/imgs/drawing.svg
bioCancer/inst/htmlwidgets
bioCancer/inst/htmlwidgets/coffeewheel.js
bioCancer/inst/htmlwidgets/coffeewheel.yaml
bioCancer/inst/htmlwidgets/d3-coffeewheel.js
bioCancer/inst/htmlwidgets/d3-coffeewheel_2.js
bioCancer/inst/htmlwidgets/d3.min.js
bioCancer/inst/htmlwidgets/d3.min_2.js
bioCancer/inst/htmlwidgets/jquery-2.1.3.min.js
bioCancer/inst/htmlwidgets/metabologram.js
bioCancer/inst/htmlwidgets/metabologram.yaml
bioCancer/inst/htmlwidgets/tooltipster
bioCancer/inst/htmlwidgets/tooltipster/jquery.tooltipster.min.js
bioCancer/inst/htmlwidgets/tooltipster/tooltipster.css
bioCancer/inst/quant
bioCancer/inst/quant/data
bioCancer/inst/quant/data/heights.rda
bioCancer/inst/quant/data/houseprices.rda
bioCancer/inst/quant/quant_ui.R
bioCancer/inst/quant/tools
bioCancer/inst/quant/tools/analysis
bioCancer/inst/quant/tools/analysis/clt.R
bioCancer/inst/quant/tools/analysis/compare_means_ui.R
bioCancer/inst/quant/tools/analysis/compare_props_ui.R
bioCancer/inst/quant/tools/analysis/correlation_ui.R
bioCancer/inst/quant/tools/analysis/cross_tabs_ui.R
bioCancer/inst/quant/tools/analysis/dtree_ui.R
bioCancer/inst/quant/tools/analysis/glm_reg_ui.R
bioCancer/inst/quant/tools/analysis/prob_calc_ui.R
bioCancer/inst/quant/tools/analysis/regression_ui.R
bioCancer/inst/quant/tools/analysis/sample_size_ui.R
bioCancer/inst/quant/tools/analysis/sampling_ui.R
bioCancer/inst/quant/tools/analysis/simulater_ui.R
bioCancer/inst/quant/tools/analysis/single_mean_ui.R
bioCancer/inst/quant/tools/analysis/single_prop_ui.R
bioCancer/inst/quant/tools/help
bioCancer/inst/quant/tools/help/anova.Rmd
bioCancer/inst/quant/tools/help/clt.md
bioCancer/inst/quant/tools/help/compare_means.md
bioCancer/inst/quant/tools/help/compare_props.md
bioCancer/inst/quant/tools/help/correlation.md
bioCancer/inst/quant/tools/help/cross_tabs.md
bioCancer/inst/quant/tools/help/ctl.md
bioCancer/inst/quant/tools/help/dtree.Rmd
bioCancer/inst/quant/tools/help/dtree.md
bioCancer/inst/quant/tools/help/figures
bioCancer/inst/quant/tools/help/figures/compare_means_plot.png
bioCancer/inst/quant/tools/help/figures/compare_means_prob_calc.png
bioCancer/inst/quant/tools/help/figures/compare_means_summary.png
bioCancer/inst/quant/tools/help/figures/compare_means_summary_additional.png
bioCancer/inst/quant/tools/help/figures/compare_props_plot.png
bioCancer/inst/quant/tools/help/figures/compare_props_prob_calc.png
bioCancer/inst/quant/tools/help/figures/compare_props_summary.png
bioCancer/inst/quant/tools/help/figures/compare_props_summary_additional.png
bioCancer/inst/quant/tools/help/figures/correlation_plot.png
bioCancer/inst/quant/tools/help/figures/correlation_summary.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_chi_critical.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_chi_pvalue.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_plot.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_summary.png
bioCancer/inst/quant/tools/help/figures/dtree_model.png
bioCancer/inst/quant/tools/help/figures/dtree_plot_final.png
bioCancer/inst/quant/tools/help/figures/dtree_plot_initial.png
bioCancer/inst/quant/tools/help/figures/glm_reg_plot.png
bioCancer/inst/quant/tools/help/figures/glm_reg_predict.png
bioCancer/inst/quant/tools/help/figures/glm_reg_predict_data.png
bioCancer/inst/quant/tools/help/figures/glm_reg_summary.png
bioCancer/inst/quant/tools/help/figures/prob_calc_batteries.png
bioCancer/inst/quant/tools/help/figures/prob_calc_headphones.png
bioCancer/inst/quant/tools/help/figures/prob_calc_icecream.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_F_critical.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_F_test.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_prob_calc.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_summary.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_corr.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_hist.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_corr.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_hist.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_summary.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_corr.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_hist.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_summary.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_viz_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_predict.png
bioCancer/inst/quant/tools/help/figures/regression_summary.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex1a.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex1b.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex2a.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex2b.png
bioCancer/inst/quant/tools/help/figures/sampling.png
bioCancer/inst/quant/tools/help/figures/simulater.png
bioCancer/inst/quant/tools/help/figures/simulater_repeat.png
bioCancer/inst/quant/tools/help/figures/simulater_view.png
bioCancer/inst/quant/tools/help/figures/simulater_viz.png
bioCancer/inst/quant/tools/help/figures/single_mean_plot.png
bioCancer/inst/quant/tools/help/figures/single_mean_prob_calc.png
bioCancer/inst/quant/tools/help/figures/single_mean_summary.png
bioCancer/inst/quant/tools/help/figures/single_prop_prob_calc_p.png
bioCancer/inst/quant/tools/help/figures/single_prop_prob_calc_v.png
bioCancer/inst/quant/tools/help/figures/single_prop_summary.png
bioCancer/inst/quant/tools/help/figures/single_proportion_prob_calc_p.png
bioCancer/inst/quant/tools/help/figures/single_proportion_prob_calc_v.png
bioCancer/inst/quant/tools/help/figures/single_proportion_summary.png
bioCancer/inst/quant/tools/help/glm_reg.Rmd
bioCancer/inst/quant/tools/help/glm_reg.md
bioCancer/inst/quant/tools/help/prob_calc.Rmd
bioCancer/inst/quant/tools/help/prob_calc.md
bioCancer/inst/quant/tools/help/regression.Rmd
bioCancer/inst/quant/tools/help/regression.md
bioCancer/inst/quant/tools/help/sample_size.Rmd
bioCancer/inst/quant/tools/help/sample_size.md
bioCancer/inst/quant/tools/help/sampling.md
bioCancer/inst/quant/tools/help/simulater.Rmd
bioCancer/inst/quant/tools/help/simulater.md
bioCancer/inst/quant/tools/help/single_mean.md
bioCancer/inst/quant/tools/help/single_prop.Rmd
bioCancer/inst/quant/tools/help/single_prop.md
bioCancer/inst/rsconnect
bioCancer/inst/rsconnect/shinyapps.io
bioCancer/inst/rsconnect/shinyapps.io/kmezhoud
bioCancer/inst/rsconnect/shinyapps.io/kmezhoud/inst.dcf
bioCancer/man
bioCancer/man/Edges_Diseases_obj.Rd
bioCancer/man/Mutation_obj.Rd
bioCancer/man/Node_Diseases_obj.Rd
bioCancer/man/Node_df_FreqIn.Rd
bioCancer/man/Node_obj_CNA_ProfData.Rd
bioCancer/man/Node_obj_FreqIn.Rd
bioCancer/man/Node_obj_Met_ProfData.Rd
bioCancer/man/Node_obj_mRNA_Classifier.Rd
bioCancer/man/Studies_obj.Rd
bioCancer/man/UnifyRowNames.Rd
bioCancer/man/attriColorGene.Rd
bioCancer/man/attriColorValue.Rd
bioCancer/man/attriColorVector.Rd
bioCancer/man/attriShape2Gene.Rd
bioCancer/man/attriShape2Node.Rd
bioCancer/man/bioCancer.Rd
bioCancer/man/checkDimensions.Rd
bioCancer/man/coffeewheel.Rd
bioCancer/man/coffeewheelOutput.Rd
bioCancer/man/displayTable.Rd
bioCancer/man/getFreqMutData.Rd
bioCancer/man/getListProfData.Rd
bioCancer/man/grepRef.Rd
bioCancer/man/metabologram.Rd
bioCancer/man/reStrColorGene.Rd
bioCancer/man/reStrDimension.Rd
bioCancer/man/reStrDisease.Rd
bioCancer/man/renderCoffeewheel.Rd
bioCancer/man/sampleWheelData.Rd
bioCancer/man/whichGeneList.Rd
bioCancer/tests
bioCancer/tests/testthat
bioCancer/tests/testthat.R
bioCancer/tests/testthat/test_funs.R
bioCancer/vignettes
bioCancer/vignettes/bioCancer.Rmd
bioCancer/vignettes/figures
bioCancer/vignettes/figures/80x15.png
bioCancer/vignettes/figures/Classifier_Table.png
bioCancer/vignettes/figures/Plot_enrich.png
bioCancer/vignettes/figures/ReactomeLegend.png
bioCancer/vignettes/figures/Reactome_Network.png
bioCancer/vignettes/figures/anti_join.png
bioCancer/vignettes/figures/boxplot.png
bioCancer/vignettes/figures/combine_avengers_superheroes.png
bioCancer/vignettes/figures/compareClusterDO.png
bioCancer/vignettes/figures/compareClusterGO.png
bioCancer/vignettes/figures/compareClusterKEGG.png
bioCancer/vignettes/figures/explore.png
bioCancer/vignettes/figures/full_join.png
bioCancer/vignettes/figures/inner_join.png
bioCancer/vignettes/figures/join_publishers_superheroes.png
bioCancer/vignettes/figures/join_superheroes_publishers.png
bioCancer/vignettes/figures/left_join.png
bioCancer/vignettes/figures/merge_heroes_publishers.png
bioCancer/vignettes/figures/merge_publishers_heroes.png
bioCancer/vignettes/figures/outer_join.png
bioCancer/vignettes/figures/pivotr.png
bioCancer/vignettes/figures/right_join.png