bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

AuthorKarim Mezhoud [aut, cre]
Date of publicationNone
MaintainerKarim Mezhoud <kmezhoud@gmail.com>
LicenseAGPL-3 | file LICENSE
Version1.2.0
http://kmezhoud.github.io/bioCancer

View on Bioconductor

Man pages

attriColorGene: Attribute Color to Gene

attriColorValue: Attribute Color to Value

attriColorVector: Attribute color to a vector of numeric values

attriShape2Gene: Attribute shape to nodes

attriShape2Node: Attributes shape to Nodes

bioCancer: Launch bioCancer with default browser

checkDimensions: Chech wich Cases and genetic profiles are available for every...

coffeewheel: This is an htmlwidgets-based visualization tool for...

coffeewheelOutput: Widget output function for use in Shiny

displayTable: Display dataframe in table using DT package

Edges_Diseases_obj: get Edges dataframe for Gene/Disease association from...

getFreqMutData: get mutation frequency

getListProfData: get list of data frame with profiles data (CNA,mRNA,...

grepRef: search and get genetic profiles (CNA,mRNA, Methylation,...

metabologram: Circular plot of hierarchital data of genetic profile.

Mutation_obj: Atribute mutation frequency to nodes

Node_df_FreqIn: Attributes size to Nodes depending on number of interaction

Node_Diseases_obj: Attributes color and shape to Nodes of Diseases

Node_obj_CNA_ProfData: Attribute CNA data to node border

Node_obj_FreqIn: Attribute interaction frequency to node size

Node_obj_Met_ProfData: Attribute gene Methylation to Nodes

Node_obj_mRNA_Classifier: Atrribute genes expression to color nodes

renderCoffeewheel: Widget render function for use in Shiny

reStrColorGene: Restructure the list of color attributed to the genes in...

reStrDimension: Restructure the list of color attributed to the genes in...

reStrDisease: Restructure the list of color attributed to the genes in...

sampleWheelData: Sample data for wheel initialization

Studies_obj: get object for grViz. Link Studies to genes

UnifyRowNames: Unify row names in data frame with the same order of gene...

whichGeneList: Verify which gene list is selected

Files in this package

bioCancer/DESCRIPTION
bioCancer/LICENSE
bioCancer/NAMESPACE
bioCancer/NEWS
bioCancer/R
bioCancer/R/Enrich.R bioCancer/R/Portal.R bioCancer/R/Reactome.R bioCancer/R/aaa.R bioCancer/R/bioCancer.R bioCancer/R/coffeewheel.R bioCancer/R/dyNetwork.R bioCancer/R/getListProfData.R bioCancer/R/metabologram.R bioCancer/R/zzz.R
bioCancer/README.md
bioCancer/bioCancer.Rproj
bioCancer/build
bioCancer/build/vignette.rds
bioCancer/inst
bioCancer/inst/Rbis
bioCancer/inst/Rbis/cbindna.R
bioCancer/inst/Rbis/combine.R
bioCancer/inst/Rbis/compare_means.R
bioCancer/inst/Rbis/compare_props.R
bioCancer/inst/Rbis/conjoint.R
bioCancer/inst/Rbis/conjoint_profiles.R
bioCancer/inst/Rbis/correlation.R
bioCancer/inst/Rbis/cross_tabs.R
bioCancer/inst/Rbis/dtree.R
bioCancer/inst/Rbis/explore.R
bioCancer/inst/Rbis/full_factor.R
bioCancer/inst/Rbis/glm_reg.R
bioCancer/inst/Rbis/goodness.R
bioCancer/inst/Rbis/hier_clus.R
bioCancer/inst/Rbis/kmeans_clus.R
bioCancer/inst/Rbis/mds.R
bioCancer/inst/Rbis/performance.R
bioCancer/inst/Rbis/pivotr.R
bioCancer/inst/Rbis/pmap.R
bioCancer/inst/Rbis/pre_factor.R
bioCancer/inst/Rbis/prob_calc.R
bioCancer/inst/Rbis/radiant.R
bioCancer/inst/Rbis/rbindna.R
bioCancer/inst/Rbis/regression.R
bioCancer/inst/Rbis/rfm.R
bioCancer/inst/Rbis/sample_size.R
bioCancer/inst/Rbis/sampling.R
bioCancer/inst/Rbis/simulater.R
bioCancer/inst/Rbis/single_mean.R
bioCancer/inst/Rbis/single_prop.R
bioCancer/inst/Rbis/transform.R
bioCancer/inst/Rbis/visualize.R
bioCancer/inst/base
bioCancer/inst/base/bioCancerInit.R
bioCancer/inst/base/data
bioCancer/inst/base/data/Breast.rda
bioCancer/inst/base/data/GeneList
bioCancer/inst/base/data/GeneList/102.txt
bioCancer/inst/base/data/GeneList/1021.txt
bioCancer/inst/base/data/GeneList/223.txt
bioCancer/inst/base/data/GeneList/555.txt
bioCancer/inst/base/data/GeneList/73.txt
bioCancer/inst/base/data/GeneList/DNA_damage_Response.txt
bioCancer/inst/base/data/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
bioCancer/inst/base/data/GeneList/INvasion_and_Metastasis.txt
bioCancer/inst/base/data/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
bioCancer/inst/base/data/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
bioCancer/inst/base/data/diamonds.rda
bioCancer/inst/base/data/epiGenomics.rda
bioCancer/inst/base/data/satisfaction.rda
bioCancer/inst/base/data/superheroes.rda
bioCancer/inst/base/data/toothpaste.rda
bioCancer/inst/base/data/xmRNA.rda
bioCancer/inst/base/global.R
bioCancer/inst/base/init.R
bioCancer/inst/base/server_bkp.R
bioCancer/inst/base/tools
bioCancer/inst/base/tools/app
bioCancer/inst/base/tools/app/about.md
bioCancer/inst/base/tools/app/code.R
bioCancer/inst/base/tools/app/help.R
bioCancer/inst/base/tools/app/report.R
bioCancer/inst/base/tools/app/state.R
bioCancer/inst/base/tools/app/stop.R
bioCancer/inst/base/tools/app/tutorials.md
bioCancer/inst/base/tools/data
bioCancer/inst/base/tools/data/Circomics_ui.R
bioCancer/inst/base/tools/data/Classifier.R
bioCancer/inst/base/tools/data/Classifier_ui.R
bioCancer/inst/base/tools/data/ClinicalData.R
bioCancer/inst/base/tools/data/ClinicalData_ui.R
bioCancer/inst/base/tools/data/DisGeNet.R
bioCancer/inst/base/tools/data/MutData.R
bioCancer/inst/base/tools/data/MutData_ui.R
bioCancer/inst/base/tools/data/Network.R
bioCancer/inst/base/tools/data/Network3D.R
bioCancer/inst/base/tools/data/NetworkD3_ui.R
bioCancer/inst/base/tools/data/Network_ui.R
bioCancer/inst/base/tools/data/ProfData.R
bioCancer/inst/base/tools/data/ProfData_ui.R
bioCancer/inst/base/tools/data/Reactome.R
bioCancer/inst/base/tools/data/Reactome_ui.R
bioCancer/inst/base/tools/data/chooser.R
bioCancer/inst/base/tools/data/combine_ui.R
bioCancer/inst/base/tools/data/explore_ui.R
bioCancer/inst/base/tools/data/getCircomics.R
bioCancer/inst/base/tools/data/getMegaProfData.R
bioCancer/inst/base/tools/data/getNetClassifier.R
bioCancer/inst/base/tools/data/getReactomeFUN.R
bioCancer/inst/base/tools/data/manage.R
bioCancer/inst/base/tools/data/manage_ui.R
bioCancer/inst/base/tools/data/pivotr_ui.R
bioCancer/inst/base/tools/data/transform_ui.R
bioCancer/inst/base/tools/data/ui_data.R
bioCancer/inst/base/tools/data/view.R
bioCancer/inst/base/tools/data/visualize_ui.R
bioCancer/inst/base/tools/help
bioCancer/inst/base/tools/help/Circomics.md
bioCancer/inst/base/tools/help/Classifier.md
bioCancer/inst/base/tools/help/Clinical.md
bioCancer/inst/base/tools/help/Mutation.md
bioCancer/inst/base/tools/help/Profiles.md
bioCancer/inst/base/tools/help/Reactome.md
bioCancer/inst/base/tools/help/Studies.md
bioCancer/inst/base/tools/help/code.md
bioCancer/inst/base/tools/help/combine.Rmd
bioCancer/inst/base/tools/help/combine.md
bioCancer/inst/base/tools/help/explore.md
bioCancer/inst/base/tools/help/figures
bioCancer/inst/base/tools/help/figures/80x15.png
bioCancer/inst/base/tools/help/figures/Circomics.png
bioCancer/inst/base/tools/help/figures/Circomics_Availibility.png
bioCancer/inst/base/tools/help/figures/Classifier_Table.png
bioCancer/inst/base/tools/help/figures/Plot_enrich.png
bioCancer/inst/base/tools/help/figures/ReactomeLegend.png
bioCancer/inst/base/tools/help/figures/Reactome_Network.png
bioCancer/inst/base/tools/help/figures/anti_join.png
bioCancer/inst/base/tools/help/figures/boxplot.png
bioCancer/inst/base/tools/help/figures/combine_avengers_superheroes.png
bioCancer/inst/base/tools/help/figures/compareClusterDO.png
bioCancer/inst/base/tools/help/figures/compareClusterGO.png
bioCancer/inst/base/tools/help/figures/compareClusterKEGG.png
bioCancer/inst/base/tools/help/figures/explore.png
bioCancer/inst/base/tools/help/figures/full_join.png
bioCancer/inst/base/tools/help/figures/inner_join.png
bioCancer/inst/base/tools/help/figures/join_publishers_superheroes.png
bioCancer/inst/base/tools/help/figures/join_superheroes_publishers.png
bioCancer/inst/base/tools/help/figures/left_join.png
bioCancer/inst/base/tools/help/figures/merge_heroes_publishers.png
bioCancer/inst/base/tools/help/figures/merge_publishers_heroes.png
bioCancer/inst/base/tools/help/figures/outer_join.png
bioCancer/inst/base/tools/help/figures/pivotr.png
bioCancer/inst/base/tools/help/figures/right_join.png
bioCancer/inst/base/tools/help/manage.md
bioCancer/inst/base/tools/help/pivotr.md
bioCancer/inst/base/tools/help/quit.md
bioCancer/inst/base/tools/help/report.md
bioCancer/inst/base/tools/help/state.md
bioCancer/inst/base/tools/help/transform.Rmd
bioCancer/inst/base/tools/help/transform.md
bioCancer/inst/base/tools/help/view.Rmd
bioCancer/inst/base/tools/help/view.md
bioCancer/inst/base/tools/help/visualize.md
bioCancer/inst/base/ui_bkp.R
bioCancer/inst/base/www
bioCancer/inst/base/www/bootstrap.min.css
bioCancer/inst/base/www/imgs
bioCancer/inst/base/www/imgs/80x15.png
bioCancer/inst/base/www/imgs/ReactomeLegend.png
bioCancer/inst/base/www/imgs/drawing.svg
bioCancer/inst/base/www/imgs/icon.png
bioCancer/inst/base/www/imgs/icon_copy.png
bioCancer/inst/base/www/js
bioCancer/inst/base/www/js/draggable_modal.js
bioCancer/inst/base/www/js/jquery-ui.custom.min.js
bioCancer/inst/base/www/js/math_reset.js
bioCancer/inst/base/www/js/returnTextAreaBinding.js
bioCancer/inst/base/www/js/returnTextInputBinding.js
bioCancer/inst/base/www/js/session.js
bioCancer/inst/base/www/js/video_reset.js
bioCancer/inst/base/www/rmarkdown
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bioCancer/inst/base/www/rmarkdown/DiagrammeR-binding-0.7/DiagrammeR.js
bioCancer/inst/base/www/rmarkdown/DiagrammeR-styles-0.2
bioCancer/inst/base/www/rmarkdown/DiagrammeR-styles-0.2/styles.css
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bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/SourceSansProLight.ttf
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/css/fonts/Ubuntu.ttf
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bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.eot
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bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.ttf
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bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim/html5shiv.min.js
bioCancer/inst/base/www/rmarkdown/bootstrap-3.3.1/shim/respond.min.js
bioCancer/inst/base/www/rmarkdown/chromatography-0.1
bioCancer/inst/base/www/rmarkdown/chromatography-0.1/LICENSE
bioCancer/inst/base/www/rmarkdown/chromatography-0.1/chromatography.js
bioCancer/inst/base/www/rmarkdown/d3-3.3.8
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bioCancer/inst/base/www/rmarkdown/d3-3.3.8/d3.min.js
bioCancer/inst/base/www/rmarkdown/dagre-0.4.0
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bioCancer/inst/base/www/rmarkdown/highlight
bioCancer/inst/base/www/rmarkdown/highlight/default.css
bioCancer/inst/base/www/rmarkdown/highlight/highlight.js
bioCancer/inst/base/www/rmarkdown/highlight/textmate.css
bioCancer/inst/base/www/rmarkdown/htmlwidgets-0.5
bioCancer/inst/base/www/rmarkdown/htmlwidgets-0.5/htmlwidgets.js
bioCancer/inst/base/www/rmarkdown/includes.html
bioCancer/inst/base/www/rmarkdown/jquery-1.11.0
bioCancer/inst/base/www/rmarkdown/jquery-1.11.0/jquery.min.js
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0
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bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist/mermaid.css
bioCancer/inst/base/www/rmarkdown/mermaid-0.3.0/dist/mermaid.slim.min.js
bioCancer/inst/base/www/style.css
bioCancer/inst/bioCancer
bioCancer/inst/bioCancer/bioCancerInit.R
bioCancer/inst/bioCancer/data
bioCancer/inst/bioCancer/data/Classifier.rda
bioCancer/inst/bioCancer/data/ClinicalData_gbm_tcga_pub_CNA_mRNA.rda
bioCancer/inst/bioCancer/data/ClinicalData_ucec_tcga_pub.rda
bioCancer/inst/bioCancer/data/GeneList
bioCancer/inst/bioCancer/data/GeneList/102.txt
bioCancer/inst/bioCancer/data/GeneList/1021.txt
bioCancer/inst/bioCancer/data/GeneList/223.txt
bioCancer/inst/bioCancer/data/GeneList/555.txt
bioCancer/inst/bioCancer/data/GeneList/73.txt
bioCancer/inst/bioCancer/data/GeneList/DNA_damage_Response.txt
bioCancer/inst/bioCancer/data/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
bioCancer/inst/bioCancer/data/GeneList/INvasion_and_Metastasis.txt
bioCancer/inst/bioCancer/data/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
bioCancer/inst/bioCancer/data/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
bioCancer/inst/bioCancer/data/epiGenomics.rda
bioCancer/inst/bioCancer/data/orangejuice.rda
bioCancer/inst/bioCancer/global.R
bioCancer/inst/bioCancer/rsconnect
bioCancer/inst/bioCancer/rsconnect/shinyapps.io
bioCancer/inst/bioCancer/rsconnect/shinyapps.io/kmezhoud
bioCancer/inst/bioCancer/rsconnect/shinyapps.io/kmezhoud/bioCancer.dcf
bioCancer/inst/bioCancer/server.R
bioCancer/inst/bioCancer/tools
bioCancer/inst/bioCancer/tools/analysis
bioCancer/inst/bioCancer/tools/analysis/conjoint_profiles_ui.R
bioCancer/inst/bioCancer/tools/analysis/conjoint_ui.R
bioCancer/inst/bioCancer/tools/analysis/full_factor_ui.R
bioCancer/inst/bioCancer/tools/analysis/hier_clus_ui.R
bioCancer/inst/bioCancer/tools/analysis/kmeans_clus_ui.R
bioCancer/inst/bioCancer/tools/analysis/mds_ui.R
bioCancer/inst/bioCancer/tools/analysis/pmap_ui.R
bioCancer/inst/bioCancer/tools/analysis/pre_factor_ui.R
bioCancer/inst/bioCancer/tools/help
bioCancer/inst/bioCancer/tools/help/conjoint.md
bioCancer/inst/bioCancer/tools/help/conjoint_profiles.md
bioCancer/inst/bioCancer/tools/help/figures
bioCancer/inst/bioCancer/tools/help/figures/conjoint_carpet_design.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_corr_mat.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_plot.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_profiles.png
bioCancer/inst/bioCancer/tools/help/figures/conjoint_summary.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_plot.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_plot_rotation.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_summary.png
bioCancer/inst/bioCancer/tools/help/figures/full_factor_summary_shopping.png
bioCancer/inst/bioCancer/tools/help/figures/hier_clus_dendro.png
bioCancer/inst/bioCancer/tools/help/figures/hier_clus_scree.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_cross_tabs_plot.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_cross_tabs_summary.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_plot.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_summary.png
bioCancer/inst/bioCancer/tools/help/figures/kmeans_clus_transform_recode.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot_flip.png
bioCancer/inst/bioCancer/tools/help/figures/mds_plot_tpbrands.png
bioCancer/inst/bioCancer/tools/help/figures/mds_summary.png
bioCancer/inst/bioCancer/tools/help/figures/mds_summary_tpbrands.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_all.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_brands.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_plot_brands_attr.png
bioCancer/inst/bioCancer/tools/help/figures/pmap_summary.png
bioCancer/inst/bioCancer/tools/help/figures/pre_factor_summary_plot.png
bioCancer/inst/bioCancer/tools/help/full_factor.md
bioCancer/inst/bioCancer/tools/help/hier_clus.md
bioCancer/inst/bioCancer/tools/help/kmeans_clus.md
bioCancer/inst/bioCancer/tools/help/mds.md
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bioCancer/inst/bioCancer/tools/help/pre_factor.md
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bioCancer/inst/extdata
bioCancer/inst/extdata/ReactomeFI2015.RDS
bioCancer/inst/extdata/imgs
bioCancer/inst/extdata/imgs/ReactomeLegend.png
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bioCancer/inst/htmlwidgets
bioCancer/inst/htmlwidgets/coffeewheel.js
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bioCancer/inst/quant/tools/analysis/compare_means_ui.R
bioCancer/inst/quant/tools/analysis/compare_props_ui.R
bioCancer/inst/quant/tools/analysis/correlation_ui.R
bioCancer/inst/quant/tools/analysis/cross_tabs_ui.R
bioCancer/inst/quant/tools/analysis/dtree_ui.R
bioCancer/inst/quant/tools/analysis/glm_reg_ui.R
bioCancer/inst/quant/tools/analysis/prob_calc_ui.R
bioCancer/inst/quant/tools/analysis/regression_ui.R
bioCancer/inst/quant/tools/analysis/sample_size_ui.R
bioCancer/inst/quant/tools/analysis/sampling_ui.R
bioCancer/inst/quant/tools/analysis/simulater_ui.R
bioCancer/inst/quant/tools/analysis/single_mean_ui.R
bioCancer/inst/quant/tools/analysis/single_prop_ui.R
bioCancer/inst/quant/tools/help
bioCancer/inst/quant/tools/help/anova.Rmd
bioCancer/inst/quant/tools/help/clt.md
bioCancer/inst/quant/tools/help/compare_means.md
bioCancer/inst/quant/tools/help/compare_props.md
bioCancer/inst/quant/tools/help/correlation.md
bioCancer/inst/quant/tools/help/cross_tabs.md
bioCancer/inst/quant/tools/help/ctl.md
bioCancer/inst/quant/tools/help/dtree.Rmd
bioCancer/inst/quant/tools/help/dtree.md
bioCancer/inst/quant/tools/help/figures
bioCancer/inst/quant/tools/help/figures/compare_means_plot.png
bioCancer/inst/quant/tools/help/figures/compare_means_prob_calc.png
bioCancer/inst/quant/tools/help/figures/compare_means_summary.png
bioCancer/inst/quant/tools/help/figures/compare_means_summary_additional.png
bioCancer/inst/quant/tools/help/figures/compare_props_plot.png
bioCancer/inst/quant/tools/help/figures/compare_props_prob_calc.png
bioCancer/inst/quant/tools/help/figures/compare_props_summary.png
bioCancer/inst/quant/tools/help/figures/compare_props_summary_additional.png
bioCancer/inst/quant/tools/help/figures/correlation_plot.png
bioCancer/inst/quant/tools/help/figures/correlation_summary.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_chi_critical.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_chi_pvalue.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_plot.png
bioCancer/inst/quant/tools/help/figures/cross_tabs_summary.png
bioCancer/inst/quant/tools/help/figures/dtree_model.png
bioCancer/inst/quant/tools/help/figures/dtree_plot_final.png
bioCancer/inst/quant/tools/help/figures/dtree_plot_initial.png
bioCancer/inst/quant/tools/help/figures/glm_reg_plot.png
bioCancer/inst/quant/tools/help/figures/glm_reg_predict.png
bioCancer/inst/quant/tools/help/figures/glm_reg_predict_data.png
bioCancer/inst/quant/tools/help/figures/glm_reg_summary.png
bioCancer/inst/quant/tools/help/figures/prob_calc_batteries.png
bioCancer/inst/quant/tools/help/figures/prob_calc_headphones.png
bioCancer/inst/quant/tools/help/figures/prob_calc_icecream.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_F_critical.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_F_test.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_prob_calc.png
bioCancer/inst/quant/tools/help/figures/regression_catalog_summary.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_corr.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_hist.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_diamonds_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_corr.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_hist.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_ideal_summary.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_corr.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_dashboard.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_hist.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_res_vs_pred.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_summary.png
bioCancer/inst/quant/tools/help/figures/regression_log_diamonds_viz_scatter.png
bioCancer/inst/quant/tools/help/figures/regression_predict.png
bioCancer/inst/quant/tools/help/figures/regression_summary.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex1a.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex1b.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex2a.png
bioCancer/inst/quant/tools/help/figures/sample_size_ex2b.png
bioCancer/inst/quant/tools/help/figures/sampling.png
bioCancer/inst/quant/tools/help/figures/simulater.png
bioCancer/inst/quant/tools/help/figures/simulater_repeat.png
bioCancer/inst/quant/tools/help/figures/simulater_view.png
bioCancer/inst/quant/tools/help/figures/simulater_viz.png
bioCancer/inst/quant/tools/help/figures/single_mean_plot.png
bioCancer/inst/quant/tools/help/figures/single_mean_prob_calc.png
bioCancer/inst/quant/tools/help/figures/single_mean_summary.png
bioCancer/inst/quant/tools/help/figures/single_prop_prob_calc_p.png
bioCancer/inst/quant/tools/help/figures/single_prop_prob_calc_v.png
bioCancer/inst/quant/tools/help/figures/single_prop_summary.png
bioCancer/inst/quant/tools/help/figures/single_proportion_prob_calc_p.png
bioCancer/inst/quant/tools/help/figures/single_proportion_prob_calc_v.png
bioCancer/inst/quant/tools/help/figures/single_proportion_summary.png
bioCancer/inst/quant/tools/help/glm_reg.Rmd
bioCancer/inst/quant/tools/help/glm_reg.md
bioCancer/inst/quant/tools/help/prob_calc.Rmd
bioCancer/inst/quant/tools/help/prob_calc.md
bioCancer/inst/quant/tools/help/regression.Rmd
bioCancer/inst/quant/tools/help/regression.md
bioCancer/inst/quant/tools/help/sample_size.Rmd
bioCancer/inst/quant/tools/help/sample_size.md
bioCancer/inst/quant/tools/help/sampling.md
bioCancer/inst/quant/tools/help/simulater.Rmd
bioCancer/inst/quant/tools/help/simulater.md
bioCancer/inst/quant/tools/help/single_mean.md
bioCancer/inst/quant/tools/help/single_prop.Rmd
bioCancer/inst/quant/tools/help/single_prop.md
bioCancer/inst/rsconnect
bioCancer/inst/rsconnect/shinyapps.io
bioCancer/inst/rsconnect/shinyapps.io/kmezhoud
bioCancer/inst/rsconnect/shinyapps.io/kmezhoud/inst.dcf
bioCancer/man
bioCancer/man/Edges_Diseases_obj.Rd bioCancer/man/Mutation_obj.Rd bioCancer/man/Node_Diseases_obj.Rd bioCancer/man/Node_df_FreqIn.Rd bioCancer/man/Node_obj_CNA_ProfData.Rd bioCancer/man/Node_obj_FreqIn.Rd bioCancer/man/Node_obj_Met_ProfData.Rd bioCancer/man/Node_obj_mRNA_Classifier.Rd bioCancer/man/Studies_obj.Rd bioCancer/man/UnifyRowNames.Rd bioCancer/man/attriColorGene.Rd bioCancer/man/attriColorValue.Rd bioCancer/man/attriColorVector.Rd bioCancer/man/attriShape2Gene.Rd bioCancer/man/attriShape2Node.Rd bioCancer/man/bioCancer.Rd bioCancer/man/checkDimensions.Rd bioCancer/man/coffeewheel.Rd bioCancer/man/coffeewheelOutput.Rd bioCancer/man/displayTable.Rd bioCancer/man/getFreqMutData.Rd bioCancer/man/getListProfData.Rd bioCancer/man/grepRef.Rd bioCancer/man/metabologram.Rd bioCancer/man/reStrColorGene.Rd bioCancer/man/reStrDimension.Rd bioCancer/man/reStrDisease.Rd bioCancer/man/renderCoffeewheel.Rd bioCancer/man/sampleWheelData.Rd bioCancer/man/whichGeneList.Rd
bioCancer/tests
bioCancer/tests/testthat
bioCancer/tests/testthat.R
bioCancer/tests/testthat/test_funs.R
bioCancer/vignettes
bioCancer/vignettes/bioCancer.Rmd
bioCancer/vignettes/figures
bioCancer/vignettes/figures/80x15.png
bioCancer/vignettes/figures/Classifier_Table.png
bioCancer/vignettes/figures/Plot_enrich.png
bioCancer/vignettes/figures/ReactomeLegend.png
bioCancer/vignettes/figures/Reactome_Network.png
bioCancer/vignettes/figures/anti_join.png
bioCancer/vignettes/figures/boxplot.png
bioCancer/vignettes/figures/combine_avengers_superheroes.png
bioCancer/vignettes/figures/compareClusterDO.png
bioCancer/vignettes/figures/compareClusterGO.png
bioCancer/vignettes/figures/compareClusterKEGG.png
bioCancer/vignettes/figures/explore.png
bioCancer/vignettes/figures/full_join.png
bioCancer/vignettes/figures/inner_join.png
bioCancer/vignettes/figures/join_publishers_superheroes.png
bioCancer/vignettes/figures/join_superheroes_publishers.png
bioCancer/vignettes/figures/left_join.png
bioCancer/vignettes/figures/merge_heroes_publishers.png
bioCancer/vignettes/figures/merge_publishers_heroes.png
bioCancer/vignettes/figures/outer_join.png
bioCancer/vignettes/figures/pivotr.png
bioCancer/vignettes/figures/right_join.png

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