Biocview "GeneTarget"

Analysis and Visualisation of the Human Phenotype Ontology

Analysis of Single-Cell CRISPR Screen Data

An integrated analysis package of miRNA and mRNA expression data

An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations

Assessing the regulatory potential of DNA methylation regions or sites on gene transcription

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Detecting hidden batch factors through data adaptive adjustment for biological effects

Detection of miRNAs that regulate interacting groups of pathways

Differentially regulated genes from scRNA-seq data

distinct: a method for differential analyses via hierarchical permutation tests

Engineering Evaluation by Gene Categorization (eegc)

Enrichment Approach to Predict Which Transcription Factors are Regulated

Ensemble of Gene Set Enrichment Analyses

EWCE for Multiple Gene Lists

Fast Correlation Based Filter for Feature Selection

find influential TF and Target based on multi-omics data

Functionality to Read and Manipulate SomaLogic ADAT files

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC

Generation of null ranges via bootstrapping or covariate matching

Gene regulator enrichment analysis

Gene-Specific Phenotype EstimatoR

Genetic inteRaction and EssenTiality neTwork mApper

Inferring miRNA sponge modules in heterogeneous data

In-silico methods for genetic finemapping in inbred mice

Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

Interactive Multi-Omics Cancers Data Visualization and Analysis

Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level

Mean Alterations Using Discrete Expression

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

miRDriver: A Tool to Infer Copy Number Derived miRNA-Gene Networks in Cancer

Multi-Scale Target Explorer

NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

OnASSIs Ontology Annotation and Semantic SImilarity software

Outlier Protein and Phosphosite Target Identifier

Overlay omics data onto SBGN pathway diagram

Pathway-based data integration of omics data

Plots and annotation for choosing BrainFlow target probe sequence

Precict cis-co-accessibility from single-cell chromatin accessibility data

Predict cis-co-accessibility from single-cell chromatin accessibility data

Predicting Targets for Drosophila Intragenic miRNAs

RcisTarget: Identify transcription factor binding motifs enriched on a gene list

RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

Regression-based network inference using Bayesian Model Averaging

RNA Centric Annotation System

samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"

Single Cell Inference of Regulatory Activity

spatialHeatmap

Statistical analysis of RNA editing sites and hyper-editing regions

Systems biology tool to simulate gene regulatory circuits

Systems EPigenomics Inference of Regulatory Activity

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Tools for the analysis of heterogeneous tissues

Transcriptional Rewiring

Transcription Factors Enrichment Analysis

visualization and interpretation of textual information from omics summary data through network analysis

Weighting protein-protein interactions

Biocview "GeneTarget"

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