MetaboSignal: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

Getting started

Package details

AuthorAndrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Bioconductor views GeneSignaling GeneTarget GraphAndNetwork KEGG Network Pathways Reactome Software
MaintainerAndrea Rodriguez-Martinez <andrea.rodriguez-martinez13@imperial.ac.uk>, Rafael Ayala <r.ayala14@imperial.ac.uk>
LicenseGPL-3
Version1.20.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboSignal")

Try the MetaboSignal package in your browser

Any scripts or data that you put into this service are public.

MetaboSignal documentation built on Nov. 8, 2020, 6 p.m.