Biocview "KEGG"

Activity and Diversity Analysis Module Graphical User Interface
Activity and Diversity Analysis Module Graphical User Interface
ADAM: Activity and Diversity Analysis Module
ADAM: Activity and Diversity Analysis Module
A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq
A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq
A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
Annotate sequences with KEGG pathways
Annotate transcripts and predicted protein sequences
An R package for pathway analysis using topological information
An R package for pathway analysis using topological information
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
A Systems Biology Approach for Drug Repurposing
A tool set for 3D Trans-Omic network visualization with Cytoscape
Bayesian clustering and imputationa of single cell methylomes
Bayesian clustering and imputationa of single cell methylomes
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Build Annotation From Online Database
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Client-side REST access to KEGG
Client-side REST access to KEGG
Codon Usage Analysis and Prediction of Gene Expressivity
Codon Usage Analysis and Prediction of Gene Expressivity
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
dgeAnalysis
Differential Expression Analysis for RNA-seq data through a robust variance component test
Ensemble of Gene Set Enrichment Analyses
Ensemble of Gene Set Enrichment Analyses
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Exploration and Significant Biology on a Gene Set.
Functional analysis of metabolic and transcriptomic data
Functional Enrichment analysis
Functional Enrichment analysis
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
Gene set enrichment data structures and methods
Gene set enrichment data structures and methods
GRAPH Interaction from pathway Topological Environment
GRAPH Interaction from pathway Topological Environment
graph support for KO, KEGG Orthology
HTSanalyzeR2: An R package for functional annotation, network analysis and time series analysis of high-throughput data
Integrating microRNA expression into signaling pathways for pathway analysis
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
Interpretation and enrichment for metabolomics data
Interpretation and enrichment for metabolomics data
KEGG analysis and visualizing of differentially expressed genes
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Learn and Apply Cell Type Signatures
Learn and Apply Cell Type Signatures
Massive and Integrative Gene Set Analysis
Massive and Integrative Gene Set Analysis
Metabolite Set Enrichment Analysis (MSEA)
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
MLP
Model higher-order methylation profiles
Model higher-order methylation profiles
Model higher-order methylation profiles
netboxr
netboxr
Network-based prioritization of putative metabolite IDs
Network-based prioritization of putative metabolite IDs
Network-based prioritization of putative metabolite IDs
Package for CTDbase data query, visualization and downstream analysis
Package for CTDbase data query, visualization and downstream analysis
Pathway Enrichment Analysis Based on Bayesian Network
Pathway Enrichment Analysis Based on Bayesian Network
Pathway fingerprinting for analysis of gene expression arrays
Pathway fingerprinting for analysis of gene expression arrays
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Permutation-Based Confidence for Molecular Classification
Plot Gene Ontology and KEGG pathway Annotation and Abundance
PoTRA: Pathways of Topological Rank Analysis
PoTRA: Pathways of Topological Rank Analysis
PoTRA: Pathways of Topological Rank Analysis
Principal Coordinates and Hotelling's T-Square method
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Random walk with restart on multiplex and heterogeneous Networks
Random walk with restart on multiplex and heterogeneous Networks
Representing Different Biological Sets
Representing Different Biological Sets
Representing Different Biological Sets
Representing Different Biological Sets
R Interface to UniProt Web Services
R Interface to UniProt Web Services
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
signet: Selection Inference in Gene NETworks
signet: Selection Inference in Gene NETworks
StarBioTrek
StarBioTrek
StarBioTrek
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
Statistical Analysis of the GeneChip
Visualization of Functional Enrichment Result
Visualization of Functional Enrichment Result
Visualization of Functional Enrichment Result
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize biclusters identified in gene expression data