Biocview "KEGG"

An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
An R package for pathway analysis using topological information
An R package for pathway analysis using topological information
An R package to perform the network enrichment analysis (NEA).
A Systems Biology Approach for Drug Repurposing
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Better prediction by use of co-data: Adaptive group-regularized ridge regression
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Client-side REST access to KEGG
Client-side REST access to KEGG
Client-side REST access to KEGG
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
Ensemble of Gene Set Enrichment Analyses
Ensemble of Gene Set Enrichment Analyses
Functional similarities
Gene set enrichment data structures and methods
Gene set enrichment data structures and methods
Gene set enrichment data structures and methods
GRAPH Interaction from pathway Topological Environment
GRAPH Interaction from pathway Topological Environment
GRAPH Interaction from pathway Topological Environment
graph support for KO, KEGG Orthology
graph support for KO, KEGG Orthology
Integrating microRNA expression into signaling pathways for pathway analysis
Integrating microRNA expression into signaling pathways for pathway analysis
Interpretation and Enrichment for Metabolomics Data
KEGG analysis and visualizing of differentially expressed genes
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Massive and Integrative Gene Set Analysis
Massive and Integrative Gene Set Analysis
Massive and Integrative Gene Set Analysis
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
MLP
MLP
Model higher-order methylation profiles
Model higher-order methylation profiles
Model higher-order methylation profiles
Model higher-order methylation profiles
Pathway fingerprinting for analysis of gene expression arrays
Pathway fingerprinting for analysis of gene expression arrays
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Permutation-Based Confidence for Molecular Classification
Permutation-Based Confidence for Molecular Classification
Principal Coordinates and Hotelling's T-Square method
Principal Coordinates and Hotelling's T-Square method
R Interface to UniProt Web Services
R Interface to UniProt Web Services
R Interface to UniProt Web Services
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
signet: Selection Inference in Gene NETworks
StarBioTrek
StarBioTrek
StarBioTrek
StarTrek
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
Statistical Analysis of the GeneChip
Statistical Analysis of the GeneChip
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize biclusters identified in gene expression data
Visualize biclusters identified in gene expression data