intermine/rintermine: R Interface with InterMine-Powered Databases

Databases based on the InterMine platform such as FlyMine, modMine (modENCODE), RatMine, YeastMine, HumanMine and TargetMine are integrated databases of genomic, expression and protein data for various organisms. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge. This R package provides interfaces with these databases through webservices. It makes most from the correspondence of the data frame object in R and the table object in databases, while hiding the details of data exchange through XML or JSON.

Getting started

Package details

AuthorBing Wang, Julie Sullivan, Rachel Lyne, Konstantinos Kyritsis, Celia Sanchez
Bioconductor views AlternativeSplicing ComparativeGenomics DifferentialExpression FunctionalGenomics FunctionalPrediction GO GeneExpression GeneRegulation GeneSetEnrichment GenomeAnnotation GenomeWideAssociation KEGG Microarray MultipleComparison Pathways Proteomics Reactome SNP SystemsBiology Visualization
MaintainerInterMine Team <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
intermine/rintermine documentation built on Jan. 10, 2022, 4:24 p.m.