Biocview "GenomeAnnotation"

Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Annotation Database Interface
Annotation Database Interface
Annotation of Genomic Regions to Genomic Annotations
Annotation of Genomic Regions to Genomic Annotations
Annotation of Genomic Regions to Genomic Annotations
An R package for analysis of massive parallel sequencing based RNA structure probing data
An R package for analysis of massive parallel sequencing based RNA structure probing data
An R package for analysis of massive parallel sequencing based RNA structure probing data
Client for GREAT Analysis
Client for GREAT Analysis
Client for GREAT Analysis
Client for GREAT Analysis
Data and functions for dealing with microRNAs
Data and functions for dealing with microRNAs
DeepBlueR
DeepBlueR
Delayed operations on array-like objects
Delayed operations on array-like objects
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
dplyr-based Access to Bioconductor Annotation Resources
dplyr-based Access to Bioconductor Annotation Resources
dplyr-based Access to Bioconductor Annotation Resources
Genometric Correlation package
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLstats: computationally efficient analysis for eQTL and allied studies
gQTLstats: computationally efficient analysis for eQTL and allied studies
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
HDF5 back end for DelayedArray objects
HDF5 back end for DelayedArray objects
Illumina 450K methylation array spatial analysis methods
Interval-Wise Testing for Omics Data
Interval-Wise Testing for Omics Data
Interval-Wise Testing for Omics Data
Introduce *Ranges to bedtools users
Introduce *Ranges to bedtools users
Introduce *Ranges to bedtools users
Location overlap analysis for enrichment of genomic ranges
Location overlap analysis for enrichment of genomic ranges
Locus overlap analysis for enrichment of genomic ranges
Locus overlap analysis for enrichment of genomic ranges
Making 2D Hilbert Curve
Making 2D Hilbert Curve
Making 2D Hilbert Curve
Making 2D Hilbert Curve
Making Enriched Heatmaps
Making Enriched Heatmaps
Making Enriched Heatmaps
Making Enriched Heatmaps
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation-Based Inference of Regulatory Activity
Optimal Gene Extensions From Histone Modification ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
pipeline for single cell RNA-seq data analysis
Prediction of intronic splicing branchpoints
Prediction of intronic splicing branchpoints
Prediction of intronic splicing branchpoints
Promoter identification from large-scale TSS profiling data
Promoter identification from large-scale TSS profiling data
Promoter identification from large-scale TSS profiling data
Quantitative DNA sequencing for chromosomal aberrations
Quantitative DNA sequencing for chromosomal aberrations
Quantitative DNA sequencing for chromosomal aberrations
Representation and manipulation of genomic intervals and variables defined along a genome
Representation and manipulation of genomic intervals and variables defined along a genome
Representation and manipulation of genomic intervals and variables defined along a genome
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
RNA Centric Annotation System
RNA Centric Annotation System
RNA Centric Annotation System
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Significance-based Modules Integrating the Transcriptome and Epigenome
Significance-based Modules Integrating the Transcriptome and Epigenome
Significance-based Modules Integrating the Transcriptome and Epigenome
Subread sequence alignment for R
Subread sequence alignment for R
SummarizedExperiment container
SummarizedExperiment container
SummarizedExperiment container
The genomic STate ANnotation package
The Genomic STate ANnotation Package
Tools for computational epigenomics
Tools for computational epigenomics
Tools for making and manipulating transcript centric annotations
Tools for making and manipulating transcript centric annotations
Tools for region- and process-centric analyses of multiple assay types
Utilities for manipulating chromosome and other 'seqname' identifiers
Utilities for manipulating chromosome and other 'seqname' identifiers