microRNA: Data and functions for dealing with microRNAs

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Different data resources for microRNAs and some functions for manipulating them.

Author
R. Gentleman, S. Falcon
Date of publication
None
Maintainer
"James F. Reid" <james.reid@ifom-ieo-campus.it>
License
Artistic-2.0
Version
1.32.0

View on Bioconductor

Man pages

get_selfhyb_subseq
Get Self-Hybridizing Subsequences
hsSeqs
Human Mature microRNA Sequences
hsTargets
Human microRNAs and their target IDs
matchSeeds
A function to match seed regions to sequences.
mmSeqs
Mouse Mature microRNA Sequences
mmTargets
Mouse microRNAs and their target IDs
RNA2DNA
A Function to translate RNA sequences into DNA sequences.
s3utr
Test sequence data
seedRegions
A function to retrieve the seed regions from microRNA...

Files in this package

microRNA/DESCRIPTION
microRNA/NAMESPACE
microRNA/R
microRNA/R/get_selfhyb_subseq.R
microRNA/R/seedReg.R
microRNA/data
microRNA/data/datalist
microRNA/data/hsSeqs.rda
microRNA/data/hsTargets.rda
microRNA/data/mmSeqs.rda
microRNA/data/mmTargets.rda
microRNA/data/s3utr.rda
microRNA/inst
microRNA/inst/extdata
microRNA/inst/extdata/hsa.gff
microRNA/inst/extdata/matSeqsGen.R
microRNA/inst/extdata/mature.fa
microRNA/inst/extdata/mirna.txt
microRNA/inst/extdata/targetGen.R
microRNA/inst/scripts
microRNA/inst/scripts/sequence-similarity.R
microRNA/man
microRNA/man/RNA2DNA.Rd
microRNA/man/get_selfhyb_subseq.Rd
microRNA/man/hsSeqs.Rd
microRNA/man/hsTargets.Rd
microRNA/man/matchSeeds.Rd
microRNA/man/mmSeqs.Rd
microRNA/man/mmTargets.Rd
microRNA/man/s3utr.Rd
microRNA/man/seedRegions.Rd