microRNA: Data and functions for dealing with microRNAs
Version 1.34.0

Different data resources for microRNAs and some functions for manipulating them.

AuthorR. Gentleman, S. Falcon
Bioconductor views GenomeAnnotation Infrastructure SequenceMatching
Date of publicationNone
Maintainer"James F. Reid" <james.reid@ifom-ieo-campus.it>
LicenseArtistic-2.0
Version1.34.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("microRNA")

Popular man pages

get_selfhyb_subseq: Get Self-Hybridizing Subsequences
hsSeqs: Human Mature microRNA Sequences
matchSeeds: A function to match seed regions to sequences.
mmSeqs: Mouse Mature microRNA Sequences
RNA2DNA: A Function to translate RNA sequences into DNA sequences.
s3utr: Test sequence data
seedRegions: A function to retrieve the seed regions from microRNA...
See all...

All man pages Function index File listing

Man pages

get_selfhyb_subseq: Get Self-Hybridizing Subsequences
hsSeqs: Human Mature microRNA Sequences
hsTargets: Human microRNAs and their target IDs
matchSeeds: A function to match seed regions to sequences.
mmSeqs: Mouse Mature microRNA Sequences
mmTargets: Mouse microRNAs and their target IDs
RNA2DNA: A Function to translate RNA sequences into DNA sequences.
s3utr: Test sequence data
seedRegions: A function to retrieve the seed regions from microRNA...

Functions

RNA2DNA Man page Source code
buildEl Source code
get_selfhyb_subseq Man page Source code
hsSeqs Man page
hsTargets Man page
matchSeeds Man page Source code
mmSeqs Man page
mmTargets Man page
s3utr Man page
seedRegions Man page Source code
show_selfhyb_counts Man page Source code
show_selfhyb_lengths Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/get_selfhyb_subseq.R
R/seedReg.R
data
data/datalist
data/hsSeqs.rda
data/hsTargets.rda
data/mmSeqs.rda
data/mmTargets.rda
data/s3utr.rda
inst
inst/extdata
inst/extdata/hsa.gff
inst/extdata/matSeqsGen.R
inst/extdata/mature.fa
inst/extdata/mirna.txt
inst/extdata/targetGen.R
inst/scripts
inst/scripts/sequence-similarity.R
man
man/RNA2DNA.Rd
man/get_selfhyb_subseq.Rd
man/hsSeqs.Rd
man/hsTargets.Rd
man/matchSeeds.Rd
man/mmSeqs.Rd
man/mmTargets.Rd
man/s3utr.Rd
man/seedRegions.Rd
microRNA documentation built on May 20, 2017, 9:23 p.m.

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