mmTargets: Mouse microRNAs and their target IDs

In microRNA: Data and functions for dealing with microRNAs

Description

A set of mouse microRNA names and their corresponding known targets given as ensembl Transcript IDs.

Usage

data(mmTargets)

Format

A data frame of microRNAs and their target ensembl IDs as recovered from miRBase. Additional columns are also provided to give the Chromosome as well as the start and end position of the microRNA binding site, and the strand orientation (plus or minus).

Details

Each mapping represents a different mouse microRNA, paired with one viable target. Other information about where the microRNA binds is also included. Some microRNAs have multiple targets and so some microRNAs may be represented more than once.

Source

http://microrna.sanger.ac.uk/sequences/index.shtml

References

miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. NAR, 2006, 34, Database Issue, D140-D144

The microRNA Registry. Griffiths-Jones S. NAR, 2004, 32, Database Issue, D109-D111

Examples

data(mmTargets)

Example output

microRNA documentation built on Nov. 8, 2020, 7:50 p.m.