timpeters82/DMRcate-release: Illumina 450K methylation array spatial analysis methods

De novo identification and extraction of differentially methylated regions (DMRs) in the human genome using Illumina Infinium HumanMethylation450 BeadChip array data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes bedGraph generation, GRanges generation and plotting functions.

Getting started

Package details

AuthorTim Peters
Bioconductor views DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression Genetics GenomeAnnotation MethylationArray Microarray MultipleComparison OneChannel QualityControl TimeCourse TwoChannel
MaintainerTim Peters <t.peters@garvan.org.au>
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
timpeters82/DMRcate-release documentation built on May 31, 2019, 2:29 p.m.