Biocview "TimeCourse"

Add-on to CellNOptR: Discretized time treatments
Add-on to CellNOptR: Discretized time treatments
Analysis of 4sU-seq and RNA-seq time-course data
Analysis of 4sU-seq and RNA-seq time-course data
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Annotation and analysis of biological dynamical systems using flow cytometry
Annotation and analysis of biological dynamical systems using flow cytometry
Annotation and analysis of biological dynamical systems using flow cytometry
Artificial Components Detection of Differentially Expressed Genes
Artificial Components Detection of Differentially Expressed Genes
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Cell OrderiNg by FluorEScence Signal
Cell OrderiNg by FluorEScence Signal
Clustering of Time Series Gene Expression data
Clustering of Time Series Gene Expression data
Clustering of Time Series Gene Expression data
Coordinated Gene Activity in Pattern Sets
Coordinated Gene Activity in Pattern Sets
Coordinated Gene Activity in Pattern Sets
deltaGseg
deltaGseg
Detection of DE genes in time series data using impulse models
Detection of DE genes in time series data using impulse models
Detection of DE genes in time series data using impulse models
Differential expression analysis of longitudinal count data sets
Differential expression analysis of longitudinal count data sets
Differential expression analysis of longitudinal count data sets
Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Extraction of Differential Gene Expression
Extraction of Differential Gene Expression
Extraction of Differential Gene Expression
Extraction of Differential Gene Expression
Fitting cell population growth models
Fitting cell population growth models
Gaussian Process Ranking and Estimation of Gene Expression time-series
Gaussian Process Ranking and Estimation of Gene Expression time-series
Gaussian Process Ranking and Estimation of Gene Expression time-series
Gene Regulatory Network Inference Using Time Series
Gene Regulatory Network Inference Using Time Series
GUI for limma package with Affymetrix microarrays
GUI for limma package with Affymetrix microarrays
GUI for limma package with two color microarrays
GUI for limma package with two color microarrays
Identify differentially expressed genes in microarray time-course data
Identify differentially expressed genes in microarray time-course data
Illumina 450K methylation array spatial analysis methods
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Linear Models for Microarray Data
Linear Models for Microarray Data
Linear Models for Microarray Data
LiquidAssociation
LiquidAssociation
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
MoPS - Model-based Periodicity Screening
MoPS - Model-based Periodicity Screening
Network reverse engineering from time course data.
Network reverse engineering from time course data.
ODE add-on to CellNOptR
ODE add-on to CellNOptR
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
Package to work with miRNAs and miRNA targets with R
Package to work with miRNAs and miRNA targets with R
Protein Profiling
Protein Profiling
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
R framework for exploration and analysis of respirometry data
R framework for exploration and analysis of respirometry data
R framework for exploration and analysis of respirometry data
Rhythmicity Analysis Incorporating Non-parametric Methods
Rhythmicity Analysis Incorporating Non-parametric Methods
R Normalization and Inference of Time Series data
R Normalization and Inference of Time Series data
R Normalization and Inference of Time Series data
Significance of periodic expression pattern in time-series data
Significance of periodic expression pattern in time-series data
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Soft clustering of time series gene expression data
Soft clustering of time series gene expression data
Statistical Analysis for Developmental Microarray Time Course Data
Statistical Analysis for Developmental Microarray Time Course Data
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time course sequencing data analysis
Time course sequencing data analysis
Time course sequencing data analysis
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Transcription factor Inference through Gaussian process Reconstruction of Expression
Transcription factor Inference through Gaussian process Reconstruction of Expression
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Wavelet-Based Models for Tiling Array Transcriptome Analysis
Wavelet-Based Models for Tiling Array Transcriptome Analysis
Wavelet-Based Models for Tiling Array Transcriptome Analysis