acde: Artificial Components Detection of Differentially Expressed Genes

This package provides a multivariate inferential analysis method for detecting differentially expressed genes in gene expression data. It uses artificial components, close to the data's principal components but with an exact interpretation in terms of differential genetic expression, to identify differentially expressed genes while controlling the false discovery rate (FDR). The methods on this package are described in the vignette or in the article 'Multivariate Method for Inferential Identification of Differentially Expressed Genes in Gene Expression Experiments' by J. P. Acosta, L. Lopez-Kleine and S. Restrepo (2015, pending publication).

AuthorJuan Pablo Acosta, Liliana Lopez-Kleine
Date of publicationNone
MaintainerJuan Pablo Acosta <jpacostar@unal.edu.co>
LicenseGPL-3
Version1.4.0

View on Bioconductor

Files

acde/DESCRIPTION
acde/NAMESPACE
acde/NEWS
acde/R
acde/R/ac.R acde/R/ac2.R acde/R/bcaFDR.R acde/R/fdr.R acde/R/plot.STP.R acde/R/plot.TC.R acde/R/print.STP.R acde/R/print.TC.R acde/R/qval.R acde/R/stp.R acde/R/summary.TC.R acde/R/tc.R
acde/build
acde/build/vignette.rds
acde/data
acde/data/datalist
acde/data/phytophthora.rda
acde/inst
acde/inst/CITATION
acde/inst/doc
acde/inst/doc/acde.R
acde/inst/doc/acde.Rnw
acde/inst/doc/acde.pdf
acde/inst/unitTests
acde/inst/unitTests/test_acde.R
acde/man
acde/man/ac.Rd acde/man/acde-package.Rd acde/man/bcaFDR.Rd acde/man/fdr.Rd acde/man/phytophthora.Rd acde/man/plot.STP.Rd acde/man/plot.TC.Rd acde/man/print.STP.Rd acde/man/print.TC.Rd acde/man/qval.Rd acde/man/stp.Rd acde/man/tc.Rd
acde/tests
acde/tests/runTests.R
acde/vignettes
acde/vignettes/Plot_PI_7.pdf
acde/vignettes/acde.Rnw
acde/vignettes/acde.bib
acde/vignettes/resVignette.rda

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