CNORdt: Add-on to CellNOptR: Discretized time treatments

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CNORdt")
AuthorA. MacNamara
Bioconductor views CellBasedAssays CellBiology Proteomics TimeCourse
Date of publicationNone
MaintainerA. MacNamara <aidan.macnamara@ebi.ac.uk>
LicenseGPL-2
Version1.18.0

View on Bioconductor

Files

ChangeLog.txt
DESCRIPTION
NAMESPACE
R
R/computeScoreDT.R R/convert2array.R R/cutAndPlotResultsDT.R R/gaBinaryDT.R R/getFitDT.R R/simulatorDT.R
build
build/vignette.rds
data
data/CNOlistPB.RData
data/modelPB.RData
inst
inst/doc
inst/doc/CNORdt-vignette-example.R inst/doc/CNORdt-vignette.R
inst/doc/CNORdt-vignette.Rnw
inst/doc/CNORdt-vignette.pdf
inst/extdata
inst/extdata/ToyModelPB.csv
inst/extdata/ToyModelPB.sif
man
man/CNOlistPB.Rd man/computeScoreDT.Rd man/convert2array.Rd man/cutAndPlotResultsDT.Rd man/gaBinaryDT.Rd man/getFitDT.Rd man/modelPB.Rd man/simulatorDT.Rd
src
src/simulatorDT.c
vignettes
vignettes/CNORdt-vignette-plot.pdf
vignettes/CNORdt-vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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