Biocview "CellBiology"

Add-on to CellNOptR: Discretized time treatments
Add-on to CellNOptR: Discretized time treatments
An R interface for computational modeling of tumor progression
An R interface for computational modeling of tumor progression
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
Bayesian Analysis of Single-Cell Sequencing data
Bayesian Analysis of Single-Cell Sequencing data
BraDiPluS - Braille Display Plugs Data Analysis
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Cell birth and death rates estimation
cell counter
Cell OrderiNg by FluorEScence Signal
Clonogenic Survival Analysis in R made easy!
Clonogenic Survival Analysis in R made easy!
cn.mops - Mixture of Poissons for CNV detection in NGS data
cn.mops - Mixture of Poissons for CNV detection in NGS data
CNV detection tool for targeted NGS panel data
CNV detection tool for targeted NGS panel data
Compare Patient Samples to Cell Line Models Using Molecular Data and Weighted Similarity
Comparing tumour copy number profiles
Comparison between multiple levels of gene expression
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
Convex Analysis of Mixtures for Tissue Heterogeneity Characterization
Convex Analysis of Mixtures for Tissue Heterogeneity Characterization
Convex Analysis of Mixtures Version 3
CopyKit
COSMOS (Causal Oriented Search of Multi-Omic Space)
COSMOS (Causal Oriented Search of Multi-Omic Space)
Creates diffusion maps
Creates diffusion maps
Creates hatched patterns for scatterplots
CRImage a package to classify cells and calculate tumour cellularity
cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
Deconvolution by Convex Analysis of Mixtures
Deconvolution by Convex Analysis of Mixtures
Delineate outstanding genomic zones of differential gene activity
Delineate outstanding genomic zones of differential gene activity
DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
Differential abundance analysis with a right censored covariate in high-dimensional cytometry
Differential cell-type-specific allelic imbalance
Differential discovery in high-dimensional cytometry via high-resolution clustering
Differential discovery in high-dimensional cytometry via high-resolution clustering
Differential expression analysis and model fitting for single-cell RNA-seq data
Differential expression analysis and model fitting for single-cell RNA-seq data
Differential Expression Analysis for RNA-seq data through a robust variance component test
Differential expression analysis of longitudinal count data sets
Differential expression analysis of longitudinal count data sets
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Exploratory Analysis of ATAC-seq data
Finding Co-occuring motifs of transcription factor binding sites
FISHalyseR a package for automated FISH quantification
Functional Network Analysis
Functional Network Analysis
functions for genome-wide application of Liquid Association
functions for genome-wide application of Liquid Association
Gaussian mixture modeling for heavy-tailed distributions in Flow Cytometry data
Human Protein Atlas in R
Human Protein Atlas in R
Identifies cell population in flow cytometry data.
immunological Elastic-Net model, implementation and optimization
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inferring Cell-Specific Gene Regulatory Network
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
k-nearest neighbour batch effect test
Landscape Single Cell Entropy
Linear Models for Microarray Data
Linear Models for Microarray Data
LiquidAssociation
Marker Enrichment Modeling (MEM)
Marker Enrichment Modeling (MEM)
MetaCyto: A package for meta-analysis of cytometry data
MetaCyto: A package for meta-analysis of cytometry data
Multiview Intercellular SpaTial modeling framework
Multiview Intercellular SpaTial modeling framework
Non-parametric Flow Cytometry Data Gating
ODE add-on to CellNOptR
OVESEG-test to detect tissue/cell-specific markers
OVESEG-test to detect tissue/cell-specific markers
Perform co-DE gene analysis
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Prize: an R package for prioritization estimation based on analytic hierarchy process
Profiling and Analyzing Intrinsically Disordered Proteins in R
Profiling and Analyzing Intrinsically Disordered Proteins in R
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Regression Models with Multivariate Outcomes for Mass Cytometry Experiments
Retrieve and analyze data from the Human Protein Atlas
Retrieve and analyze data from the Human Protein Atlas
Retrieve and analyze data from the Human Protein Atlas
Robust prediction of clinical outcomes using cytometry data without cell gating
Robust prediction of clinical outcomes using cytometry data without cell gating
R package for immunogenomics data handling and association analysis
R package for immunogenomics data handling and association analysis
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
Sequential Flow Cytometry Data Gating
Sequential Flow Cytometry Data Gating
Sequential Flow Cytometry Data Gating
Single Cell Entropy
spatialHeatmap
spatialHeatmap
Spatial Image Analysis of Tissues
Stability Ranking
Stan implementation of BASiCS
Statistical analysis for the Colony Formation Assay
Statistical analysis for the Colony Formation Assay
Statistical Analysis of MPRA data
Statistical Analysis of MPRA data
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Ternary Network Estimation
Ternary Network Estimation
Tools for the Analysis of Ratiometric Data
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells.
tool to run PHONEMeS on phosphoproteomic data
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Using self-organizing maps for visualization and interpretation of cytometry data
Using self-organizing maps for visualization and interpretation of cytometry data
Using self-organizing maps for visualization and interpretation of cytometry data
uSORT: A self-refining ordering pipeline for gene selection
uSORT: A self-refining ordering pipeline for gene selection
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data [option]