saezlab/COSMOS: COSMOS (Causal Oriented Search of Multi-Omic Space)

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets based on prior knowledge of signaling, metabolic, and gene regulatory networks. It estimated the activities of transcrption factors and kinases and finds a network-level causal reasoning. Thereby, COSMOS provides mechanistic hypotheses for experimental observations across mulit-omics datasets.

Getting started

Package details

Bioconductor views CellBiology GeneSignaling Metabolomics Network Pathways Proteomics Transcriptomics
Maintainer
LicenseGPL-3
Version1.5.2
URL https://github.com/saezlab/COSMOSR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("saezlab/COSMOS")
saezlab/COSMOS documentation built on Sept. 17, 2023, 1:22 p.m.