translate_res: translate_res

In saezlab/COSMOS: COSMOS (Causal Oriented Search of Multi-Omic Space)

translate_res

Description

formats the network with readable names

Usage

translate_res(SIF, ATT, HMDB_mapper_vec = NULL)

Arguments

SIF	result SIF of decoupleRnival pipeline
ATT	result ATT of decoupleRnival pipeline
HMDB_mapper_vec	a named vector with HMDB Ids as names and desired metabolite names as values.

Value

list with network and attribute tables.

Examples

# Create a meta network data frame
example_SIF <- data.frame(
source = c("GPX1", "Gene863__GPX1"),
target = c("Gene863__GPX1", "Metab__HMDB0003337_c"),
sign = c(1, 1)
)

example_ATT <- data.frame(
Nodes = c("GPX1", "Gene863__GPX1","Metab__HMDB0003337_c"),
sign = c(1, 1, 1)
)

example_SIF

data("HMDB_mapper_vec")

translated_res <- translate_res(example_SIF,example_ATT,HMDB_mapper_vec)

translated_res$SIF

saezlab/COSMOS documentation built on Sept. 17, 2023, 1:22 p.m.