gmt_to_dataframe: Convert gmt file to data frame
In saezlab/COSMOS: COSMOS (Causal Oriented Search of Multi-Omic Space)
gmt_to_dataframe R Documentation
Convert gmt file to data frame
Description
This function is designed to convert a gmt file (gene set file from MSigDB)
into a two column data frame where the first column corresponds to omic
features (genes) and the second column to associated terms (pathway the gene
belongs to). One gene can belong to several pathways.
Usage
gmt_to_dataframe(gmtfile)
Arguments
gmtfile
a full path name of the gmt file to be converted
Value
a two column data frame where the first column corresponds to omic
features and the second column to associated terms (pathways).
saezlab/COSMOS documentation built on July 24, 2024, 7:37 p.m.
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| gmt_to_dataframe | R Documentation |
Convert gmt file to data frame
Description
This function is designed to convert a gmt file (gene set file from MSigDB) into a two column data frame where the first column corresponds to omic features (genes) and the second column to associated terms (pathway the gene belongs to). One gene can belong to several pathways.
Usage
gmt_to_dataframe(gmtfile)
Arguments
gmtfile |
a full path name of the gmt file to be converted |
Value
a two column data frame where the first column corresponds to omic features and the second column to associated terms (pathways).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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