Prize: Prize: an R package for prioritization estimation based on analytic hierarchy process

The high throughput studies often produce large amounts of numerous genes and proteins of interest. While it is difficult to study and validate all of them. Analytic Hierarchy Process (AHP) offers a novel approach to narrowing down long lists of candidates by prioritizing them based on how well they meet the research goal. AHP is a mathematical technique for organizing and analyzing complex decisions where multiple criteria are involved. The technique structures problems into a hierarchy of elements, and helps to specify numerical weights representing the relative importance of each element. Numerical weight or priority derived from each element allows users to find alternatives that best suit their goal and their understanding of the problem.

AuthorDaryanaz Dargahi <daryanazdargahi@gmail.com>
Date of publicationNone
MaintainerDaryanaz Dargahi <daryanazdargahi@gmail.com>
LicenseArtistic-2.0
Version1.5.1

View on Bioconductor

Man pages

aggreg.judgement-data: A pairwise comparison matrix (PCM)

ahmatrix: ahmatrix

ahmatrixObj-class: Class 'ahmatrixObj'

ahp: ahp

ahplot: ahplot

ahp_matrix: AHP matrix slot

ahpObj-class: Class 'ahpObj'

ahp_plot: AHP plot slot

ahp_weights: AHP weights slot

AIJ: Aggregated individual judgements (AIJ) slot

AIP: Aggregated individual priorities (AIP) slot

ariAggreg-class: Class 'ariAggreg'

CI: Consistency index (CI) slot

crplot: crplot

dplot: dplot

epitopeLength.PCM-data: A pairwise comparison matrix (PCM)

epitopeNum.PCM-data: A pairwise comparison matrix (PCM)

epitope_num_rating-data: Rating categories and idealised priorities

epitope.PCM-data: A pairwise comparison matrix (PCM)

epitope_size_rating-data: Rating categories and idealised priorities

freq_exp_rating-data: Rating categories and idealised priorities

freq.PCM-data: A pairwise comparison matrix (PCM)

gaggregate: gaggregate

GCR: Group consistency ratio (GCR) slot

genes.list-data: A pairwise comparison matrix (PCM)

geoAggreg-class: Class 'geoAggreg'

ICR: Individual consistency ratio (ICR) slot

ind1-data: An individual judgement matrix

ind2-data: An individual judgement matrix

ind3-data: An individual judgement matrix

ind4-data: An individual judgement matrix

IP: Individual priority (IP) slot

normal_exp_rating-data: Rating categories and idealised priorities

normal.PCM-data: A pairwise comparison matrix (PCM)

number-data: A pairwise comparison matrix (PCM)

numEpitope_alternative_category-data: A pairwise comparison matrix (PCM)

pipeline: pipeline

pipelineObj-class: Class 'pipelineObj'

Prize-package: Prize: an R package for prioritization estimation based on...

rainbowplot: rainbowplot

rainbow_plot: Rainbow plot slot

rating: rating

ratingObj-class: Class 'ratingObj'

RM: Rating matrix (RM) slot

saaty_inconsistency: Saaty inconsistency slot

simulation: Simulation slot

tumor_exp_rating-data: Rating categories and idealised priorities

tumor.PCM-data: A pairwise comparison matrix (PCM)

weight: Weight slot

weight_plot: Weight plot slot

wplot: Wplot

Files in this package

Prize/DESCRIPTION
Prize/NAMESPACE
Prize/R
Prize/R/AllClasses.R Prize/R/aggregation.R Prize/R/ahmatrix.R Prize/R/ahp.R Prize/R/ahplot.R Prize/R/crplot.R Prize/R/dplot.R Prize/R/generic-methods.R Prize/R/pipeline.R Prize/R/rainbowplot.R Prize/R/rating.R Prize/R/show-methods.R Prize/R/wplot.R
Prize/build
Prize/build/vignette.rds
Prize/inst
Prize/inst/NEWS
Prize/inst/doc
Prize/inst/doc/Prize.R
Prize/inst/doc/Prize.Rnw
Prize/inst/doc/Prize.pdf
Prize/inst/extdata
Prize/inst/extdata/aggreg.judgement.tsv
Prize/inst/extdata/epitope.PCM.tsv
Prize/inst/extdata/epitopeLength.PCM.tsv
Prize/inst/extdata/epitopeNum.PCM.tsv
Prize/inst/extdata/epitope_num_rating.tsv
Prize/inst/extdata/epitope_size_rating.tsv
Prize/inst/extdata/freq.PCM.tsv
Prize/inst/extdata/freq_exp_rating.tsv
Prize/inst/extdata/genes.list.tsv
Prize/inst/extdata/ind1.tsv
Prize/inst/extdata/ind2.tsv
Prize/inst/extdata/ind3.tsv
Prize/inst/extdata/ind4.tsv
Prize/inst/extdata/normal.PCM.tsv
Prize/inst/extdata/normal_exp_rating.tsv
Prize/inst/extdata/numEpitope_alternative_category.tsv
Prize/inst/extdata/number.tsv
Prize/inst/extdata/pipeline.tsv
Prize/inst/extdata/tumor.PCM.tsv
Prize/inst/extdata/tumor_exp_rating.tsv
Prize/inst/unitTests
Prize/inst/unitTests/test_ahmatrix.R
Prize/inst/unitTests/test_ahp.R
Prize/inst/unitTests/test_gaggregate.R
Prize/inst/unitTests/test_pipeline.R
Prize/inst/unitTests/test_rating.R
Prize/man
Prize/man/AIJ.Rd Prize/man/AIP.Rd Prize/man/CI.Rd Prize/man/GCR.Rd Prize/man/ICR.Rd Prize/man/IP.Rd Prize/man/Prize-package.Rd Prize/man/RM.Rd Prize/man/aggreg.judgement-data.Rd Prize/man/ahmatrix.Rd Prize/man/ahmatrixObj-class.Rd Prize/man/ahp.Rd Prize/man/ahpObj-class.Rd Prize/man/ahp_matrix.Rd Prize/man/ahp_plot.Rd Prize/man/ahp_weights.Rd Prize/man/ahplot.Rd Prize/man/ariAggreg-class.Rd Prize/man/crplot.Rd Prize/man/dplot.Rd Prize/man/epitope.PCM-data.Rd Prize/man/epitopeLength.PCM-data.Rd Prize/man/epitopeNum.PCM-data.Rd Prize/man/epitope_num_rating-data.Rd Prize/man/epitope_size_rating-data.Rd Prize/man/freq.PCM-data.Rd Prize/man/freq_exp_rating-data.Rd Prize/man/gaggregate.Rd Prize/man/genes.list-data.Rd Prize/man/geoAggreg-class.Rd Prize/man/ind1-data.Rd Prize/man/ind2-data.Rd Prize/man/ind3-data.Rd Prize/man/ind4-data.Rd Prize/man/normal.PCM-data.Rd Prize/man/normal_exp_rating-data.Rd Prize/man/numEpitope_alternative_category-data.Rd Prize/man/number-data.Rd Prize/man/pipeline.Rd Prize/man/pipelineObj-class.Rd Prize/man/rainbow_plot.Rd Prize/man/rainbowplot.Rd Prize/man/rating.Rd Prize/man/ratingObj-class.Rd Prize/man/saaty_inconsistency.Rd Prize/man/simulation.Rd Prize/man/tumor.PCM-data.Rd Prize/man/tumor_exp_rating-data.Rd Prize/man/weight.Rd Prize/man/weight_plot.Rd Prize/man/wplot.Rd
Prize/tests
Prize/tests/runTests.R
Prize/vignettes
Prize/vignettes/Prize.Rnw
Prize/vignettes/Prize.bib

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