Prize: Prize: an R package for prioritization estimation based on analytic hierarchy process

The high throughput studies often produce large amounts of numerous genes and proteins of interest. While it is difficult to study and validate all of them. Analytic Hierarchy Process (AHP) offers a novel approach to narrowing down long lists of candidates by prioritizing them based on how well they meet the research goal. AHP is a mathematical technique for organizing and analyzing complex decisions where multiple criteria are involved. The technique structures problems into a hierarchy of elements, and helps to specify numerical weights representing the relative importance of each element. Numerical weight or priority derived from each element allows users to find alternatives that best suit their goal and their understanding of the problem.

AuthorDaryanaz Dargahi <daryanazdargahi@gmail.com>
Date of publicationNone
MaintainerDaryanaz Dargahi <daryanazdargahi@gmail.com>
LicenseArtistic-2.0
Version1.5.1

View on Bioconductor

Man pages

aggreg.judgement-data: A pairwise comparison matrix (PCM)

ahmatrix: ahmatrix

ahmatrixObj-class: Class 'ahmatrixObj'

ahp: ahp

ahplot: ahplot

ahp_matrix: AHP matrix slot

ahpObj-class: Class 'ahpObj'

ahp_plot: AHP plot slot

ahp_weights: AHP weights slot

AIJ: Aggregated individual judgements (AIJ) slot

AIP: Aggregated individual priorities (AIP) slot

ariAggreg-class: Class 'ariAggreg'

CI: Consistency index (CI) slot

crplot: crplot

dplot: dplot

epitopeLength.PCM-data: A pairwise comparison matrix (PCM)

epitopeNum.PCM-data: A pairwise comparison matrix (PCM)

epitope_num_rating-data: Rating categories and idealised priorities

epitope.PCM-data: A pairwise comparison matrix (PCM)

epitope_size_rating-data: Rating categories and idealised priorities

freq_exp_rating-data: Rating categories and idealised priorities

freq.PCM-data: A pairwise comparison matrix (PCM)

gaggregate: gaggregate

GCR: Group consistency ratio (GCR) slot

genes.list-data: A pairwise comparison matrix (PCM)

geoAggreg-class: Class 'geoAggreg'

ICR: Individual consistency ratio (ICR) slot

ind1-data: An individual judgement matrix

ind2-data: An individual judgement matrix

ind3-data: An individual judgement matrix

ind4-data: An individual judgement matrix

IP: Individual priority (IP) slot

normal_exp_rating-data: Rating categories and idealised priorities

normal.PCM-data: A pairwise comparison matrix (PCM)

number-data: A pairwise comparison matrix (PCM)

numEpitope_alternative_category-data: A pairwise comparison matrix (PCM)

pipeline: pipeline

pipelineObj-class: Class 'pipelineObj'

Prize-package: Prize: an R package for prioritization estimation based on...

rainbowplot: rainbowplot

rainbow_plot: Rainbow plot slot

rating: rating

ratingObj-class: Class 'ratingObj'

RM: Rating matrix (RM) slot

saaty_inconsistency: Saaty inconsistency slot

simulation: Simulation slot

tumor_exp_rating-data: Rating categories and idealised priorities

tumor.PCM-data: A pairwise comparison matrix (PCM)

weight: Weight slot

weight_plot: Weight plot slot

wplot: Wplot

Functions

aggreg.judgement Man page
aggregJudgement Man page
aggreg.judgement-data Man page
ahmatrix Man page
ahmatrixObj Man page
ahmatrixObj,ANY-method Man page
ahmatrixObj-class Man page
ahp Man page
ahplot Man page
ahpmatrix Man page
ahp_matrix Man page
ahp_matrix,ANY-method Man page
ahpObj Man page
ahpObj, ANY-method Man page
ahpObj-class Man page
ahpplot Man page
ahp_plot Man page
ahp_plot,ANY-method Man page
ahpweights Man page
ahp_weights Man page
ahp_weights,ANY-method Man page
aij Man page
Aij Man page
AIJ Man page
AIJ,ANY-method Man page
aip Man page
Aip Man page
AIP Man page
AIP,ANY-method Man page
ariAggreg Man page
ariAggreg, ANY-method Man page
ariAggreg-class Man page
ci Man page
Ci Man page
CI Man page
CI,ANY-method Man page
crplot Man page
dplot Man page
epitopeLengthPCM Man page
epitopeLength.PCM Man page
epitopeLength.PCM-data Man page
epitopeNumPCM Man page
epitopeNum.PCM Man page
epitopeNum.PCM-data Man page
epitope_num_rating Man page
epitopeNumRating Man page
epitope_num_rating-data Man page
epitopePCM Man page
epitope.PCM Man page
epitope.PCM-data Man page
epitope_size_rating Man page
epitopeSizeRating Man page
epitope_size_rating-data Man page
freq_exp_rating Man page
freqExpRating Man page
freq_exp_rating-data Man page
freqPCM Man page
freq.PCM Man page
freq.PCM-data Man page
gaggregate Man page
gcr Man page
Gcr Man page
GCR Man page
GCR,ANY-method Man page
genes.list Man page
genesList Man page
genes.list-data Man page
geoAggreg Man page
geoAggreg, ANY-method Man page
geoAggreg-class Man page
icr Man page
Icr Man page
ICR Man page
ICR,ANY-method Man page
ind1 Man page
ind1-data Man page
ind2 Man page
ind2-data Man page
ind3 Man page
ind3-data Man page
ind4 Man page
ind4-data Man page
ip Man page
Ip Man page
IP Man page
IP,ANY-method Man page
normal_exp_rating Man page
normalExpRating Man page
normal_exp_rating-data Man page
normalPCM Man page
normal.PCM Man page
normal.PCM-data Man page
number Man page
number-data Man page
numEpitope_alternative_category Man page
numEpitopeAlternativeCategory Man page
numEpitope_alternative_category-data Man page
pipeline Man page
pipelineObj Man page
pipelineObj, ANY-method Man page
pipelineObj-class Man page
Prize Man page
Prize-package Man page
rainbowplot Man page
rainbow_plot Man page
rainbow_plot,ANY-method Man page
rating Man page
ratingObj Man page
ratingObj, ANY-method Man page
ratingObj-class Man page
rm Man page
Rm Man page
RM Man page
RM,ANY-method Man page
saatyinconsistency Man page
saaty_inconsistency Man page
saaty_inconsistency,ANY-method Man page
simulation Man page
simulation,ANY-method Man page
tumor_exp_rating Man page
tumorExpRating Man page
tumor_exp_rating-data Man page
tumorPCM Man page
tumor.PCM Man page
tumor.PCM-data Man page
weight Man page
weight,ANY-method Man page
weight_plot Man page
weight_plot,ANY-method Man page
wplot Man page

Files

Prize/DESCRIPTION
Prize/NAMESPACE
Prize/R
Prize/R/AllClasses.R Prize/R/aggregation.R Prize/R/ahmatrix.R Prize/R/ahp.R Prize/R/ahplot.R Prize/R/crplot.R Prize/R/dplot.R Prize/R/generic-methods.R Prize/R/pipeline.R Prize/R/rainbowplot.R Prize/R/rating.R Prize/R/show-methods.R Prize/R/wplot.R
Prize/build
Prize/build/vignette.rds
Prize/inst
Prize/inst/NEWS
Prize/inst/doc
Prize/inst/doc/Prize.R
Prize/inst/doc/Prize.Rnw
Prize/inst/doc/Prize.pdf
Prize/inst/extdata
Prize/inst/extdata/aggreg.judgement.tsv
Prize/inst/extdata/epitope.PCM.tsv
Prize/inst/extdata/epitopeLength.PCM.tsv
Prize/inst/extdata/epitopeNum.PCM.tsv
Prize/inst/extdata/epitope_num_rating.tsv
Prize/inst/extdata/epitope_size_rating.tsv
Prize/inst/extdata/freq.PCM.tsv
Prize/inst/extdata/freq_exp_rating.tsv
Prize/inst/extdata/genes.list.tsv
Prize/inst/extdata/ind1.tsv
Prize/inst/extdata/ind2.tsv
Prize/inst/extdata/ind3.tsv
Prize/inst/extdata/ind4.tsv
Prize/inst/extdata/normal.PCM.tsv
Prize/inst/extdata/normal_exp_rating.tsv
Prize/inst/extdata/numEpitope_alternative_category.tsv
Prize/inst/extdata/number.tsv
Prize/inst/extdata/pipeline.tsv
Prize/inst/extdata/tumor.PCM.tsv
Prize/inst/extdata/tumor_exp_rating.tsv
Prize/inst/unitTests
Prize/inst/unitTests/test_ahmatrix.R
Prize/inst/unitTests/test_ahp.R
Prize/inst/unitTests/test_gaggregate.R
Prize/inst/unitTests/test_pipeline.R
Prize/inst/unitTests/test_rating.R
Prize/man
Prize/man/AIJ.Rd Prize/man/AIP.Rd Prize/man/CI.Rd Prize/man/GCR.Rd Prize/man/ICR.Rd Prize/man/IP.Rd Prize/man/Prize-package.Rd Prize/man/RM.Rd Prize/man/aggreg.judgement-data.Rd Prize/man/ahmatrix.Rd Prize/man/ahmatrixObj-class.Rd Prize/man/ahp.Rd Prize/man/ahpObj-class.Rd Prize/man/ahp_matrix.Rd Prize/man/ahp_plot.Rd Prize/man/ahp_weights.Rd Prize/man/ahplot.Rd Prize/man/ariAggreg-class.Rd Prize/man/crplot.Rd Prize/man/dplot.Rd Prize/man/epitope.PCM-data.Rd Prize/man/epitopeLength.PCM-data.Rd Prize/man/epitopeNum.PCM-data.Rd Prize/man/epitope_num_rating-data.Rd Prize/man/epitope_size_rating-data.Rd Prize/man/freq.PCM-data.Rd Prize/man/freq_exp_rating-data.Rd Prize/man/gaggregate.Rd Prize/man/genes.list-data.Rd Prize/man/geoAggreg-class.Rd Prize/man/ind1-data.Rd Prize/man/ind2-data.Rd Prize/man/ind3-data.Rd Prize/man/ind4-data.Rd Prize/man/normal.PCM-data.Rd Prize/man/normal_exp_rating-data.Rd Prize/man/numEpitope_alternative_category-data.Rd Prize/man/number-data.Rd Prize/man/pipeline.Rd Prize/man/pipelineObj-class.Rd Prize/man/rainbow_plot.Rd Prize/man/rainbowplot.Rd Prize/man/rating.Rd Prize/man/ratingObj-class.Rd Prize/man/saaty_inconsistency.Rd Prize/man/simulation.Rd Prize/man/tumor.PCM-data.Rd Prize/man/tumor_exp_rating-data.Rd Prize/man/weight.Rd Prize/man/weight_plot.Rd Prize/man/wplot.Rd
Prize/tests
Prize/tests/runTests.R
Prize/vignettes
Prize/vignettes/Prize.Rnw
Prize/vignettes/Prize.bib

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