Prize: Prize: an R package for prioritization estimation based on analytic hierarchy process

The high throughput studies often produce large amounts of numerous genes and proteins of interest. While it is difficult to study and validate all of them. Analytic Hierarchy Process (AHP) offers a novel approach to narrowing down long lists of candidates by prioritizing them based on how well they meet the research goal. AHP is a mathematical technique for organizing and analyzing complex decisions where multiple criteria are involved. The technique structures problems into a hierarchy of elements, and helps to specify numerical weights representing the relative importance of each element. Numerical weight or priority derived from each element allows users to find alternatives that best suit their goal and their understanding of the problem.

Author
Daryanaz Dargahi <daryanazdargahi@gmail.com>
Date of publication
None
Maintainer
Daryanaz Dargahi <daryanazdargahi@gmail.com>
License
Artistic-2.0
Version
1.4.0

View on Bioconductor

Man pages

aggreg.judgement-data
A pairwise comparison matrix (PCM)
ahmatrix
ahmatrix
ahmatrixObj-class
Class 'ahmatrixObj'
ahp
ahp
ahplot
ahplot
ahp_matrix
AHP matrix slot
ahpObj-class
Class 'ahpObj'
ahp_plot
AHP plot slot
ahp_weights
AHP weights slot
AIJ
Aggregated individual judgements (AIJ) slot
AIP
Aggregated individual priorities (AIP) slot
ariAggreg-class
Class 'ariAggreg'
CI
Consistency index (CI) slot
crplot
crplot
dplot
dplot
epitopeLength.PCM-data
A pairwise comparison matrix (PCM)
epitopeNum.PCM-data
A pairwise comparison matrix (PCM)
epitope_num_rating-data
Rating categories and idealised priorities
epitope.PCM-data
A pairwise comparison matrix (PCM)
epitope_size_rating-data
Rating categories and idealised priorities
freq_exp_rating-data
Rating categories and idealised priorities
freq.PCM-data
A pairwise comparison matrix (PCM)
gaggregate
gaggregate
GCR
Group consistency ratio (GCR) slot
genes.list-data
A pairwise comparison matrix (PCM)
geoAggreg-class
Class 'geoAggreg'
ICR
Individual consistency ratio (ICR) slot
ind1-data
An individual judgement matrix
ind2-data
An individual judgement matrix
ind3-data
An individual judgement matrix
ind4-data
An individual judgement matrix
IP
Individual priority (IP) slot
normal_exp_rating-data
Rating categories and idealised priorities
normal.PCM-data
A pairwise comparison matrix (PCM)
number-data
A pairwise comparison matrix (PCM)
numEpitope_alternative_category-data
A pairwise comparison matrix (PCM)
pipeline
pipeline
pipelineObj-class
Class 'pipelineObj'
Prize-package
Prize: an R package for prioritization estimation based on...
rainbowplot
rainbowplot
rainbow_plot
Rainbow plot slot
rating
rating
ratingObj-class
Class 'ratingObj'
RM
Rating matrix (RM) slot
saaty_inconsistency
Saaty inconsistency slot
simulation
Simulation slot
tumor_exp_rating-data
Rating categories and idealised priorities
tumor.PCM-data
A pairwise comparison matrix (PCM)
weight
Weight slot
weight_plot
Weight plot slot
wplot
Wplot

Files in this package

Prize/DESCRIPTION
Prize/NAMESPACE
Prize/R
Prize/R/AllClasses.R
Prize/R/aggregation.R
Prize/R/ahmatrix.R
Prize/R/ahp.R
Prize/R/ahplot.R
Prize/R/crplot.R
Prize/R/dplot.R
Prize/R/generic-methods.R
Prize/R/pipeline.R
Prize/R/rainbowplot.R
Prize/R/rating.R
Prize/R/show-methods.R
Prize/R/wplot.R
Prize/build
Prize/build/vignette.rds
Prize/inst
Prize/inst/NEWS
Prize/inst/doc
Prize/inst/doc/Prize.R
Prize/inst/doc/Prize.Rnw
Prize/inst/doc/Prize.pdf
Prize/inst/extdata
Prize/inst/extdata/aggreg.judgement.tsv
Prize/inst/extdata/epitope.PCM.tsv
Prize/inst/extdata/epitopeLength.PCM.tsv
Prize/inst/extdata/epitopeNum.PCM.tsv
Prize/inst/extdata/epitope_num_rating.tsv
Prize/inst/extdata/epitope_size_rating.tsv
Prize/inst/extdata/freq.PCM.tsv
Prize/inst/extdata/freq_exp_rating.tsv
Prize/inst/extdata/genes.list.tsv
Prize/inst/extdata/ind1.tsv
Prize/inst/extdata/ind2.tsv
Prize/inst/extdata/ind3.tsv
Prize/inst/extdata/ind4.tsv
Prize/inst/extdata/normal.PCM.tsv
Prize/inst/extdata/normal_exp_rating.tsv
Prize/inst/extdata/numEpitope_alternative_category.tsv
Prize/inst/extdata/number.tsv
Prize/inst/extdata/pipeline.tsv
Prize/inst/extdata/tumor.PCM.tsv
Prize/inst/extdata/tumor_exp_rating.tsv
Prize/inst/unitTests
Prize/inst/unitTests/test_ahmatrix.R
Prize/inst/unitTests/test_ahp.R
Prize/inst/unitTests/test_gaggregate.R
Prize/inst/unitTests/test_pipeline.R
Prize/inst/unitTests/test_rating.R
Prize/man
Prize/man/AIJ.Rd
Prize/man/AIP.Rd
Prize/man/CI.Rd
Prize/man/GCR.Rd
Prize/man/ICR.Rd
Prize/man/IP.Rd
Prize/man/Prize-package.Rd
Prize/man/RM.Rd
Prize/man/aggreg.judgement-data.Rd
Prize/man/ahmatrix.Rd
Prize/man/ahmatrixObj-class.Rd
Prize/man/ahp.Rd
Prize/man/ahpObj-class.Rd
Prize/man/ahp_matrix.Rd
Prize/man/ahp_plot.Rd
Prize/man/ahp_weights.Rd
Prize/man/ahplot.Rd
Prize/man/ariAggreg-class.Rd
Prize/man/crplot.Rd
Prize/man/dplot.Rd
Prize/man/epitope.PCM-data.Rd
Prize/man/epitopeLength.PCM-data.Rd
Prize/man/epitopeNum.PCM-data.Rd
Prize/man/epitope_num_rating-data.Rd
Prize/man/epitope_size_rating-data.Rd
Prize/man/freq.PCM-data.Rd
Prize/man/freq_exp_rating-data.Rd
Prize/man/gaggregate.Rd
Prize/man/genes.list-data.Rd
Prize/man/geoAggreg-class.Rd
Prize/man/ind1-data.Rd
Prize/man/ind2-data.Rd
Prize/man/ind3-data.Rd
Prize/man/ind4-data.Rd
Prize/man/normal.PCM-data.Rd
Prize/man/normal_exp_rating-data.Rd
Prize/man/numEpitope_alternative_category-data.Rd
Prize/man/number-data.Rd
Prize/man/pipeline.Rd
Prize/man/pipelineObj-class.Rd
Prize/man/rainbow_plot.Rd
Prize/man/rainbowplot.Rd
Prize/man/rating.Rd
Prize/man/ratingObj-class.Rd
Prize/man/saaty_inconsistency.Rd
Prize/man/simulation.Rd
Prize/man/tumor.PCM-data.Rd
Prize/man/tumor_exp_rating-data.Rd
Prize/man/weight.Rd
Prize/man/weight_plot.Rd
Prize/man/wplot.Rd
Prize/tests
Prize/tests/runTests.R
Prize/vignettes
Prize/vignettes/Prize.Rnw
Prize/vignettes/Prize.bib