CNORfeeder: Integration of CellNOptR to add missing links

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

AuthorF.Eduati
Date of publicationNone
MaintainerF.Eduati <eduati@ebi.ac.uk>
LicenseGPL-3
Version1.14.0

View on Bioconductor

Files

CNORfeeder/ChangeLog.txt
CNORfeeder/DESCRIPTION
CNORfeeder/NAMESPACE
CNORfeeder/R
CNORfeeder/R/Binference.R CNORfeeder/R/MIinference.R CNORfeeder/R/addLink.R CNORfeeder/R/addLinkAND.R CNORfeeder/R/computeScoreT1W.R CNORfeeder/R/cutModelW.R CNORfeeder/R/downCueGraph.R CNORfeeder/R/gaBinaryT1W.R CNORfeeder/R/getFitW.R CNORfeeder/R/linksRanking.R CNORfeeder/R/makeBTables.R CNORfeeder/R/mapBTables2model.R CNORfeeder/R/mapDDN2model.R CNORfeeder/R/searchLinkGraph.R CNORfeeder/R/searchPPIigraph.R CNORfeeder/R/upSignalGraph.R CNORfeeder/R/weighting.R
CNORfeeder/build
CNORfeeder/build/vignette.rds
CNORfeeder/data
CNORfeeder/data/PPINigraph.RData
CNORfeeder/data/UniprotIDdream.RData
CNORfeeder/inst
CNORfeeder/inst/NEWS.Rd
CNORfeeder/inst/doc
CNORfeeder/inst/doc/CNORfeeder-vignette.R
CNORfeeder/inst/doc/CNORfeeder-vignette.Rnw
CNORfeeder/inst/doc/CNORfeeder-vignette.pdf
CNORfeeder/inst/unitTests
CNORfeeder/inst/unitTests/test_inference.R
CNORfeeder/inst/unitTests/test_integration.R
CNORfeeder/inst/unitTests/test_weighting.R
CNORfeeder/man
CNORfeeder/man/Binference.Rd CNORfeeder/man/CNORfeeder-package.Rd CNORfeeder/man/MIinference.Rd CNORfeeder/man/PPINigraph.Rd CNORfeeder/man/UniprotIDdream.Rd CNORfeeder/man/gaBinaryT1W.Rd CNORfeeder/man/linksRanking.Rd CNORfeeder/man/makeBTables.Rd CNORfeeder/man/mapBTables2model.Rd CNORfeeder/man/mapDDN2model.Rd CNORfeeder/man/weighting.Rd
CNORfeeder/tests
CNORfeeder/tests/runTests.R
CNORfeeder/vignettes
CNORfeeder/vignettes/CNORfeeder-vignette.Rnw
CNORfeeder/vignettes/DDN.pdf
CNORfeeder/vignettes/Figure1.png
CNORfeeder/vignettes/SimResultsT1_1.pdf
CNORfeeder/vignettes/integratedModel.pdf
CNORfeeder/vignettes/optModel.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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