girke-lab/eiR

Accelerated similarity searching of small molecules

girke-lab/eiR

Accelerated similarity searching of small molecules

Bioconductor-mirror/eiR

Accelerated similarity searching of small molecules

eiR

Accelerated similarity searching of small molecules

girke-lab/eiR-release

Accelerated similarity searching of small molecules

CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor-mirror/CNORdt

Add-on to CellNOptR: Discretized time treatments

saezlab/CNORdt

Add-on to CellNOptR: Discretized time treatments

rprops/Phenoflow_package

Advanced analysis of microbial flow cytometry data

Bioconductor-mirror/netprioR

A model for network-based prioritisation of genes

netprioR

A model for network-based prioritisation of genes

cbg-ethz/netprioR

A model for network-based prioritisation of genes

Bioconductor-mirror/cellHTS

Analysis of cell-based screens

cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor-mirror/cellHTS2

Analysis of cell-based screens - revised version of cellHTS

coRNAi

Analysis of co-knock-down RNAi data

Bioconductor-mirror/coRNAi

Analysis of co-knock-down RNAi data

LBMC/criblejurkat

Analysis of FACS data for the Jurkat crible project

Bioconductor-mirror/imageHTS

Analysis of high-throughput microscopy-based screens

imageHTS

Analysis of high-throughput microscopy-based screens

flowCyBar

Analyze flow cytometric data using gate information

Bioconductor-mirror/flowCyBar

Analyze flow cytometric data using gate information

flowCHIC

Analyze flow cytometric data using histogram information

Bioconductor-mirror/flowCHIC

Analyze flow cytometric data using histogram information

wrightrc/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

Bioconductor-mirror/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

Bioconductor-mirror/OperaMate

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

OperaMate

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

saezlab/BraDiPluS

BraDiPluS - Braille Display Plugs Data Analysis

Bioconductor-mirror/GRmetrics

Calculate growth-rate inhibition (GR) metrics

uc-bd2k/GRmetrics_old

Calculate growth-rate inhibition (GR) metrics

GRmetrics

Calculate growth-rate inhibition (GR) metrics

uc-bd2k/GRmetrics

Calculate growth-rate inhibition (GR) metrics

ChemmineR

Cheminformatics Toolkit for R

girke-lab/ChemmineR

Cheminformatics Toolkit for R

Bioconductor-mirror/ChemmineR

Cheminformatics Toolkit for R

girke-lab/ChemmineR-git-svn-bridge

Cheminformatics Toolkit for R

girke-lab/ChemmineR-release

Cheminformatics Toolkit for R

Bioconductor-mirror/flowBin

Combining multitube flow cytometry data by binning

flowBin

Combining multitube flow cytometry data by binning

theislab/destiny

Creates diffusion maps

Bioconductor-mirror/destiny

Creates diffusion maps

destiny

Creates diffusion maps

Bioconductor-mirror/bioassayR

Cross-target analysis of small molecule bioactivity

bioassayR

Cross-target analysis of small molecule bioactivity

TylerBackman/bioassayR

Cross-target analysis of small molecule bioactivity

TylerBackman/bioassayR-git-svn-bridge

Cross-target analysis of small molecule bioactivity

Bioconductor-mirror/prada

Data analysis for cell-based functional assays

prada

Data analysis for cell-based functional assays

lmweber/diffcyt

Differential discovery in high-dimensional cytometry via high-resolution clustering

diffcyt

Differential discovery in high-dimensional cytometry via high-resolution clustering

YosefLab/LineagePulse

Differential expression analysis and model fitting for single-cell RNA-seq data

LineagePulse

Differential expression analysis and model fitting for single-cell RNA-seq data

YosefLab/ImpulseDE2

Differential expression analysis of longitudinal count data sets

ImpulseDE2

Differential expression analysis of longitudinal count data sets

Bioconductor-mirror/ImpulseDE2

Differential expression analysis of longitudinal count data sets

DavidQuigley/HTDoseResponseCurve

Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms

Bioconductor-mirror/RNAinteract

Estimate Pairwise Interactions from multidimensional features

RNAinteract

Estimate Pairwise Interactions from multidimensional features

flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor-mirror/flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor-mirror/flowFP

Fingerprinting for Flow Cytometry

flowFP

Fingerprinting for Flow Cytometry

Bioconductor-mirror/cellGrowth

Fitting cell population growth models

cellGrowth

Fitting cell population growth models

SamGG/cellGrowth

Fitting cell population growth models

flowBeads

flowBeads: Analysis of flow bead data

Bioconductor-mirror/flowBeads

flowBeads: Analysis of flow bead data

pontikos/flowBeads

flowBeads: Analysis of flow bead data

flowCore

flowCore: Basic structures for flow cytometry data

Bioconductor-mirror/flowCore

flowCore: Basic structures for flow cytometry data

flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

Bioconductor-mirror/flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

Bioconductor-mirror/HTSanalyzeR

Gene set over-representation, enrichment and network analyses for high-throughput screens

HTSanalyzeR

Gene set over-representation, enrichment and network analyses for high-throughput screens

gespeR

Gene-Specific Phenotype EstimatoR

Bioconductor-mirror/gespeR

Gene-Specific Phenotype EstimatoR

cbg-ethz/gespeR

Gene-Specific Phenotype EstimatoR

Bioconductor-mirror/synlet

Hits Selection for Synthetic Lethal RNAi Screen Data

synlet

Hits Selection for Synthetic Lethal RNAi Screen Data

Bioconductor-mirror/immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor-mirror/mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

oneillkza/ContiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

Bioconductor-mirror/contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

Bioconductor-mirror/CNORfeeder

Integration of CellNOptR to add missing links

saezlab/CNORfeeder

Integration of CellNOptR to add missing links

CNORfeeder

Integration of CellNOptR to add missing links

csoneson/iSEE

Interactive SummarizedExperiment Explorer

csoneson/SEE

Interactive SummarizedExperiment Explorer

iSEE

Interactive SummarizedExperiment Explorer

theislab/kBET

k-nearest neighbour batch effect test

MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

hzc363/MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor-mirror/fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

girke-lab/fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

girke-lab/fmcsR-release

Mismatch Tolerant Maximum Common Substructure Searching

fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

MIMOSA

Mixture Models for Single-Cell Assays

RGLab/MIMOSA

Mixture Models for Single-Cell Assays

Bioconductor-mirror/MIMOSA

Mixture Models for Single-Cell Assays

Bioconductor-mirror/CNORode

ODE add-on to CellNOptR

CNORode

ODE add-on to CellNOptR

RTCA

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Bioconductor-mirror/RTCA

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Bioconductor-mirror/MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

DragonDuck/MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

phenoDist

Phenotypic distance measures

Bioconductor-mirror/phenoDist

Phenotypic distance measures

CMET-UGent/MicroRaman

Phenotyping of microbial Raman data

PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor-mirror/PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

cole-trapnell-lab/cicero-release

Precict cis co-accessibility from single-cell chromatin accessibility data

cole-trapnell-lab/cicero

Precict cis co-accessibility from single-cell chromatin accessibility data

jmeskas/flowCut

Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor-mirror/flowQ

Quality control for flow cytometry

flowQ

Quality control for flow cytometry

Bioconductor-mirror/QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

RGLab/cytoCore

R bindings for cytolib c++ library

cannin/rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Bioconductor-mirror/rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

CBIIT/rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

ChemmineOB

R interface to a subset of OpenBabel functionalities

girke-lab/ChemmineOB

R interface to a subset of OpenBabel functionalities

Bioconductor-mirror/ChemmineOB

R interface to a subset of OpenBabel functionalities

CytoDx

Robust prediction of clinical outcomes using cytometry data without cell gating

hzc363/CytoDx

Robust prediction of clinical outcomes using cytometry data without cell gating

Rchemcpp

Similarity measures for chemical compounds

Bioconductor-mirror/Rchemcpp

Similarity measures for chemical compounds

staRank

Stability Ranking

Bioconductor-mirror/staRank

Stability Ranking

CFAssay

Statistical analysis for the Colony Formation Assay

Bioconductor-mirror/CFAssay

Statistical analysis for the Colony Formation Assay

ZytoHMGU/CFAssay

Statistical analysis for the Colony Formation Assay

dirmeier/knockout

Statistical Analysis of High-Throughput Genetic Perturbation Screens

cbg-ethz/perturbatr

Statistical Analysis of High-Throughput Genetic Perturbation Screens

perturbatr

Statistical Analysis of High-Throughput Genetic Perturbation Screens

cbg-ethz/knockout

Statistical Analysis of High-Throughput Genetic Perturbation Screens

cbg-ethz/knockdown

Statistical Analysis of High-Throughput Genetic Perturbation Screens

RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor-mirror/RNAither

Statistical analysis of high-throughput RNAi screens

YosefLab/MPRAnalyze

Statistical Analysis of MPRA data

Bioconductor-mirror/flowStats

Statistical methods for the analysis of flow cytometry data

flowStats

Statistical methods for the analysis of flow cytometry data

Bioconductor-mirror/plateCore

Statistical tools and data structures for plate-based flow cytometry

plateCore

Statistical tools and data structures for plate-based flow cytometry

sights

Statistics and dIagnostic Graphs for HTS

Bioconductor-mirror/sights

Statistics and dIagnostic Graphs for HTS

eg-r/sights

Statistics and dIagnostic Graphs for HTS

cokelaer/CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

saezlab/CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Bioconductor-mirror/CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor-mirror/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

saeyslab/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor-mirror/flowUtils

Utilities for flow cytometry

flowUtils

Utilities for flow cytometry

flowVS

Variance stabilization in flow cytometry (and microarrays)

Bioconductor-mirror/flowVS

Variance stabilization in flow cytometry (and microarrays)

Bioconductor-mirror/flowViz

Visualization for flow cytometry

flowViz

Visualization for flow cytometry

Bioconductor-mirror/ggcyto

Visualize Cytometry data with ggplot

ggcyto

Visualize Cytometry data with ggplot

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