Bioconductor-mirror/eiR

Accelerated similarity searching of small molecules

Bioconductor-mirror/eiR

Accelerated similarity searching of small molecules

eiR

Accelerated similarity searching of small molecules

girke-lab/eiR

Accelerated similarity searching of small molecules

girke-lab/eiR-release

Accelerated similarity searching of small molecules

CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor-mirror/CNORdt

Add-on to CellNOptR: Discretized time treatments

rprops/Phenoflow_package

Advanced analysis of microbial flow cytometry data

Bioconductor-mirror/netprioR

A model for network-based prioritisation of genes

cbg-ethz/netprioR

A model for network-based prioritisation of genes

netprioR

A model for network-based prioritisation of genes

Bioconductor-mirror/cellHTS

Analysis of cell-based screens

cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor-mirror/cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor-mirror/coRNAi

Analysis of co-knock-down RNAi data

coRNAi

Analysis of co-knock-down RNAi data

cbg-ethz/knockout

Analysis of high-throughput gene perturbation screens

imageHTS

Analysis of high-throughput microscopy-based screens

Bioconductor-mirror/imageHTS

Analysis of high-throughput microscopy-based screens

flowCyBar

Analyze flow cytometric data using gate information

Bioconductor-mirror/flowCyBar

Analyze flow cytometric data using gate information

flowCHIC

Analyze flow cytometric data using histogram information

Bioconductor-mirror/flowCHIC

Analyze flow cytometric data using histogram information

wrightrc/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

Bioconductor-mirror/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

OperaMate

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Bioconductor-mirror/OperaMate

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

saezlab/BraDiPluS

BraDiPluS - Braille Display Plugs Data Analysis

Bioconductor-mirror/GRmetrics

Calculate growth-rate inhibition (GR) metrics

uc-bd2k/GRmetrics

Calculate growth-rate inhibition (GR) metrics

uc-bd2k/GRmetrics_old

Calculate growth-rate inhibition (GR) metrics

GRmetrics

Calculate growth-rate inhibition (GR) metrics

girke-lab/ChemmineR

Cheminformatics Toolkit for R

ChemmineR

Cheminformatics Toolkit for R

Bioconductor-mirror/ChemmineR

Cheminformatics Toolkit for R

girke-lab/ChemmineR-git-svn-bridge

Cheminformatics Toolkit for R

girke-lab/ChemmineR-release

Cheminformatics Toolkit for R

Bioconductor-mirror/flowBin

Combining multitube flow cytometry data by binning

flowBin

Combining multitube flow cytometry data by binning

theislab/destiny

Creates diffusion maps

Bioconductor-mirror/destiny

Creates diffusion maps

destiny

Creates diffusion maps

TylerBackman/bioassayR

Cross-target analysis of small molecule bioactivity

bioassayR

Cross-target analysis of small molecule bioactivity

TylerBackman/bioassayR-git-svn-bridge

Cross-target analysis of small molecule bioactivity

Bioconductor-mirror/bioassayR

Cross-target analysis of small molecule bioactivity

prada

Data analysis for cell-based functional assays

Bioconductor-mirror/prada

Data analysis for cell-based functional assays

YosefLab/LineagePulse

Differential expression analysis and model fitting for single-cell RNA-seq data

Bioconductor-mirror/ImpulseDE2

Differential expression analysis of longitudinal count data sets

YosefLab/ImpulseDE2

Differential expression analysis of longitudinal count data sets

ImpulseDE2

Differential expression analysis of longitudinal count data sets

DavidQuigley/HTDoseResponseCurve

Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms

RNAinteract

Estimate Pairwise Interactions from multidimensional features

Bioconductor-mirror/RNAinteract

Estimate Pairwise Interactions from multidimensional features

flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor-mirror/flowFit

Estimate proliferation in cell-tracking dye studies

flowFP

Fingerprinting for Flow Cytometry

Bioconductor-mirror/flowFP

Fingerprinting for Flow Cytometry

Bioconductor-mirror/cellGrowth

Fitting cell population growth models

cellGrowth

Fitting cell population growth models

Bioconductor-mirror/flowBeads

flowBeads: Analysis of flow bead data

pontikos/flowBeads

flowBeads: Analysis of flow bead data

flowBeads

flowBeads: Analysis of flow bead data

Bioconductor-mirror/flowCore

flowCore: Basic structures for flow cytometry data

flowCore

flowCore: Basic structures for flow cytometry data

flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

Bioconductor-mirror/flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

Bioconductor-mirror/HTSanalyzeR

Gene set over-representation, enrichment and network analyses for high-throughput screens

HTSanalyzeR

Gene set over-representation, enrichment and network analyses for high-throughput screens

Bioconductor-mirror/gespeR

Gene-Specific Phenotype EstimatoR

cbg-ethz/gespeR

Gene-Specific Phenotype EstimatoR

gespeR

Gene-Specific Phenotype EstimatoR

Bioconductor-mirror/synlet

Hits Selection for Synthetic Lethal RNAi Screen Data

synlet

Hits Selection for Synthetic Lethal RNAi Screen Data

immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor-mirror/immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor-mirror/mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

oneillkza/ContiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

Bioconductor-mirror/contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

CNORfeeder

Integration of CellNOptR to add missing links

Bioconductor-mirror/CNORfeeder

Integration of CellNOptR to add missing links

hchauvin/fluodilution

Interpretation of Fluorescence Dilution Experiments

theislab/kBET

k-nearest neighbour batch effect test

hzc363/MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

girke-lab/fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

girke-lab/fmcsR-release

Mismatch Tolerant Maximum Common Substructure Searching

Bioconductor-mirror/fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

fmcsR

Mismatch Tolerant Maximum Common Substructure Searching

RGLab/MIMOSA

Mixture Models for Single-Cell Assays

Bioconductor-mirror/MIMOSA

Mixture Models for Single-Cell Assays

MIMOSA

Mixture Models for Single-Cell Assays

CNORode

ODE add-on to CellNOptR

Bioconductor-mirror/CNORode

ODE add-on to CellNOptR

RTCA

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Bioconductor-mirror/RTCA

Open-source toolkit to analyse data from xCELLigence System (RTCA)

MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

Bioconductor-mirror/MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

DragonDuck/MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

Bioconductor-mirror/phenoDist

Phenotypic distance measures

phenoDist

Phenotypic distance measures

Bioconductor-mirror/PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor-mirror/flowQ

Quality control for flow cytometry

flowQ

Quality control for flow cytometry

Bioconductor-mirror/QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

cannin/rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Bioconductor-mirror/rcellminer

rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Bioconductor-mirror/ChemmineOB

R interface to a subset of OpenBabel functionalities

girke-lab/ChemmineOB

R interface to a subset of OpenBabel functionalities

ChemmineOB

R interface to a subset of OpenBabel functionalities

Bioconductor-mirror/Rchemcpp

Similarity measures for chemical compounds

Rchemcpp

Similarity measures for chemical compounds

Bioconductor-mirror/staRank

Stability Ranking

staRank

Stability Ranking

Bioconductor-mirror/CFAssay

Statistical analysis for the Colony Formation Assay

CFAssay

Statistical analysis for the Colony Formation Assay

Bioconductor-mirror/RNAither

Statistical analysis of high-throughput RNAi screens

RNAither

Statistical analysis of high-throughput RNAi screens

flowStats

Statistical methods for the analysis of flow cytometry data

Bioconductor-mirror/flowStats

Statistical methods for the analysis of flow cytometry data

plateCore

Statistical tools and data structures for plate-based flow cytometry

Bioconductor-mirror/plateCore

Statistical tools and data structures for plate-based flow cytometry

sights

Statistics and dIagnostic Graphs for HTS

Bioconductor-mirror/sights

Statistics and dIagnostic Graphs for HTS

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor-mirror/CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor-mirror/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

saeyslab/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

flowUtils

Utilities for flow cytometry

Bioconductor-mirror/flowUtils

Utilities for flow cytometry

Bioconductor-mirror/flowVS

Variance stabilization in flow cytometry (and microarrays)

flowVS

Variance stabilization in flow cytometry (and microarrays)

Bioconductor-mirror/flowViz

Visualization for flow cytometry

flowViz

Visualization for flow cytometry

Bioconductor-mirror/ggcyto

Visualize Cytometry data with ggplot

ggcyto

Visualize Cytometry data with ggplot

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