Biocview "CellBasedAssays"

Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Add-on to CellNOptR: Discretized time treatments
Add-on to CellNOptR: Discretized time treatments
Advanced analysis of microbial flow cytometry data
A model for network-based prioritisation of genes
A model for network-based prioritisation of genes
An algorithm to find optimal signal levels in a tree
Analysis of cell-based screens - revised version of cellHTS
Analysis of co-knock-down RNAi data
Analysis of FACS data for the Jurkat crible project
Analysis of high-throughput microscopy-based screens
Analyze flow cytometric data using gate information
Analyze flow cytometric data using histogram information
Annotation and analysis of biological dynamical systems using flow cytometry
Annotation and analysis of biological dynamical systems using flow cytometry
An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
A pipeline for processing drug sensitivity screen data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
Base NanoString Experiment Class
BraDiPluS - Braille Display Plugs Data Analysis
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Calculate growth-rate inhibition (GR) metrics
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Clonogenic Survival Analysis in R made easy!
Clonogenic Survival Analysis in R made easy!
Clustering Deviation Index (CDI)
Combining multitube flow cytometry data by binning
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
Creates diffusion maps
Creates diffusion maps
Cross-target analysis of small molecule bioactivity
Cross-target analysis of small molecule bioactivity
Cross-target analysis of small molecule bioactivity
Data analysis for cell-based functional assays
Determination of essential phenotypic elements of clusters in high-dimensional entities
Determination of essential phenotypic elements of clusters in high-dimensional entities
Differential abundance analysis with a right censored covariate in high-dimensional cytometry
Differential discovery in high-dimensional cytometry via high-resolution clustering
Differential discovery in high-dimensional cytometry via high-resolution clustering
Differential expression analysis and model fitting for single-cell RNA-seq data
Differential expression analysis and model fitting for single-cell RNA-seq data
Differential expression analysis of longitudinal count data sets
Differential expression analysis of longitudinal count data sets
Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms
Estimate Pairwise Interactions from multidimensional features
Estimate proliferation in cell-tracking dye studies
Fingerprinting for Flow Cytometry
Fingerprinting for Flow Cytometry
Fingerprinting for Flow Cytometry
Fingerprinting for Flow Cytometry
Fitting cell population growth models
Fitting cell population growth models
flowBeads: Analysis of flow bead data
flowBeads: Analysis of flow bead data
flowCore: Basic structures for flow cytometry data
flowCore: Basic structures for flow cytometry data
flowPlots: analysis plots and data class for gated flow cytometry data
Gaussian mixture modeling for heavy-tailed distributions in Flow Cytometry data
Gene set over-representation, enrichment and network analyses for high-throughput screens
Gene-Specific Phenotype EstimatoR
Gene-Specific Phenotype EstimatoR
Hits Selection for Synthetic Lethal RNAi Screen Data
Identifying differential cell populations in flow cytometry data accounting for marker frequency
Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Improves Early Build Genome Assemblies using Strand-Seq Data
Improves Early Build Genome Assemblies using Strand-Seq Data
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
iSEE Universe
iSEE Universe
iSEE Universe
k-nearest neighbour batch effect test
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
MetaCyto: A package for meta-analysis of cytometry data
MetaCyto: A package for meta-analysis of cytometry data
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Mixture Models for Single-Cell Assays
Mixture Models for Single-Cell Assays
Modified Concordance Index
Modified Concordance Index
NanoString GeoMx Tools
NanoString nCounter Tools
Normalization of Single-Cell mRNA Sequencing Data
ODE add-on to CellNOptR
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Perform a maximum contrast projection of 3D images along the z-dimension into 2D
Perform a maximum contrast projection of 3D images along the z-dimension into 2D
Phenotypic distance measures
Phenotyping of microbial Raman spectroscopy data
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Precict cis-co-accessibility from single-cell chromatin accessibility data
Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
Predict cis-co-accessibility from single-cell chromatin accessibility data
Predict cis-co-accessibility from single-cell chromatin accessibility data
Quality control and standardization of cytometry data
Quality control for flow cytometry
Quality Control of Gated Flow Cytometry Experiments
Rank-based signature enrichment analysis for single-cell data
R bindings for cytolib c++ library
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
Regression Models with Multivariate Outcomes for Mass Cytometry Experiments
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
Robust prediction of clinical outcomes using cytometry data without cell gating
Robust prediction of clinical outcomes using cytometry data without cell gating
S4 Class for segmented spatial 'omics data
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction
Similarity measures for chemical compounds
Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data
Spatial analysis of in situ cytometry data
Spatial analysis of in situ cytometry data
spatialHeatmap
spatialHeatmap
Spatial Overlay for Omic Data from Nanostring GeoMx Data
Stability Ranking
Statistical analysis for the Colony Formation Assay
Statistical analysis for the Colony Formation Assay
Statistical Analysis of High-Throughput Genetic Perturbation Screens
Statistical Analysis of High-Throughput Genetic Perturbation Screens
Statistical Analysis of High-Throughput Genetic Perturbation Screens
Statistical Analysis of High-Throughput Genetic Perturbation Screens
Statistical Analysis of High-Throughput Genetic Perturbation Screens
Statistical analysis of high-throughput RNAi screens
Statistical Analysis of MPRA data
Statistical Analysis of MPRA data
Statistical methods for the analysis of flow cytometry data
Statistical methods for the analysis of flow cytometry data
Statistical tools and data structures for plate-based flow cytometry
Statistics and dIagnostic Graphs for HTS
Statistics and dIagnostic Graphs for HTS
Tools for processing of high-dimensional cytometry data
Tools for processing of high-dimensional cytometry data
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Using self-organizing maps for visualization and interpretation of cytometry data
Using self-organizing maps for visualization and interpretation of cytometry data
Using self-organizing maps for visualization and interpretation of cytometry data
Utilities for flow cytometry
Utilities for flow cytometry
Variance stabilization in flow cytometry (and microarrays)
Variance stabilization in flow cytometry (and microarrays)
Visualization for flow cytometry
Visualize Cytometry data with ggplot
Visualize Cytometry data with ggplot