RTCA: Open-source toolkit to analyse data from xCELLigence System (RTCA)

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RTCA")
AuthorJitao David Zhang
Bioconductor views CellBasedAssays Infrastructure TimeCourse Visualization
Date of publicationNone
MaintainerJitao David Zhang <davidvonpku@gmail.com>
LicenseLGPL-3
Version1.26.0
http://code.google.com/p/xcelligence/,http://www.xcelligence.roche.com/,http://www.nextbiomotif.com/Home/scientific-programming

View on Bioconductor

Functions

actionTrack Man page
actionTrack<- Man page
actionTrack<-,RTCAtimeline,data.frame-method Man page
actionTrack,RTCAtimeline-method Man page
addAction Man page
addAction,RTCA,numeric,character-method Man page
addAction,RTCAtimeline,numeric,character-method Man page
alphaNames Man page
alphaNames2Pos Man page
combineRTCA Man page
controlView Man page
derivativeTransform Man page
derivativeTransform,RTCA-method Man page
expID Man page
expID<- Man page
expID<-,RTCA-method Man page
expID,RTCA-method Man page
factor2numeric Man page
getAction Man page
getAction,RTCA,numeric-method Man page
getAction,RTCAtimeline,numeric-method Man page
interpolationTransform Man page
interpolationTransform,RTCA-method Man page
nearestTimeIndex Man page
orderAction Man page
orderAction,RTCAtimeline-method Man page
parseRTCA Man page
plateView Man page
plotGridEffect Man page
plot,RTCA-method Man page
plotRTCA,RTCA-method Man page
ratioTransform Man page
ratioTransform,RTCA-method Man page
relevels Man page
repairAlphaName Man page
reset Man page
reset,RTCAtimeline-method Man page
rgrTransform Man page
rgrTransform,RTCA-method Man page
rmAction Man page
rmAction,RTCA,numeric-method Man page
rmAction,RTCAtimeline,numeric-method Man page
rowcol2pos Man page
RTCA-class Man page
RTCAtimeline-class Man page
RTCAtimeline<-,RTCA-method Man page
RTCAtimeline,RTCA-method Man page
show,RTCA-method Man page
sliceRTCA Man page
smoothTransform Man page
smoothTransform,RTCA,ANY-method Man page
smoothTransform,RTCA,missing-method Man page
spectramaxImport Man page
startTime Man page
startTime<- Man page
startTime,RTCAtimeline-method Man page
startTime<-,RTCAtimeline,POSIXct-method Man page
timeline Man page
timeline<- Man page
timeline<-,RTCA-method Man page
timeline,RTCA-method Man page
timepoints Man page
timepoints<- Man page
timepoints<-,RTCA-method Man page
timepoints,RTCA-method Man page
time,RTCA-method Man page
timeUnit Man page
timeUnit<- Man page
timeUnit<-,RTCAtimeline,character-method Man page
timeUnit,RTCAtimeline-method Man page
updateAction Man page
updateAction,RTCA,numeric,character-method Man page
updateAction,RTCAtimeline,numeric,character-method Man page

Files

DESCRIPTION
Makefile
NAMESPACE
NEWS
R
R/AllClasses.R R/AllGenerics.R R/AllMethods.R R/RTCAfunctions.R R/algorithms.R R/spectramaxImport.R R/visualization.R
build
build/vignette.rds
inst
inst/NEWS
inst/TODO
inst/doc
inst/doc/RTCAtransformation.R
inst/doc/RTCAtransformation.Rnw
inst/doc/RTCAtransformation.pdf
inst/doc/aboutRTCA.R
inst/doc/aboutRTCA.Rnw
inst/doc/aboutRTCA.pdf
inst/extdata
inst/extdata/WST-example-1.csv
inst/extdata/WST-example-2.csv
inst/extdata/testOutput.csv
inst/extdata/testOutputPhenoData.csv
man
man/RTCA-class.Rd man/RTCAtimeline-class.Rd man/alphaNames.Rd man/combineRTCA.Rd man/controlView.Rd man/derivativeTransform.Rd man/factor2numeric.Rd man/interpolationTransform.Rd man/nearestTimeIndex.Rd man/parseRTCA.Rd man/plateView.Rd man/plotGridEffect.Rd man/ratioTransform.Rd man/rgrTransform.Rd man/sliceRTCA.Rd man/smoothTransform.Rd man/spectramaxImport.Rd
tests
tests/essentials.R
vignettes
vignettes/RTCAtransformation.Rnw
vignettes/aboutRTCA.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.