RTCA: Open-source toolkit to analyse data from xCELLigence System (RTCA)

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Author
Jitao David Zhang
Date of publication
None
Maintainer
Jitao David Zhang <davidvonpku@gmail.com>
License
LGPL-3
Version
1.26.0
URLs

View on Bioconductor

Man pages

alphaNames
Auxilliary functions for experiments with microtitre plates
combineRTCA
Combine a list of RTCA objects
controlView
PLOT CONTROL WELLS IN RTCA DATA
derivativeTransform
DERIVATIVE TRANSFORM OF RTCA OBJECT
factor2numeric
FACTOR UNITILITIES
interpolationTransform
TRANSFORM RTCA DATA WITH INTERPOLATION
nearestTimeIndex
GET INDEX FOR NEAREST TIME
parseRTCA
PARSE RTCA OUTPUT FILE
plateView
PLATE VIEW OF RTCA DATA
plotGridEffect
PLOT GRID EFFECT OF RTCA
ratioTransform
RATIO TRANSFORMATION OF RTCA DATA
rgrTransform
TRANSFORM RTCA DATA INTO RELATIVE GROWTH RATE
RTCA-class
Class "RTCA"
RTCAtimeline-class
Class "RTCAtimeline"
sliceRTCA
SLICE RTCA OBJECT WITH TIME
smoothTransform
SMOOTH TRANSFORM OF RTCA OBJECT
spectramaxImport
Import output files from Spectramax spectrophotometer

Files in this package

RTCA/DESCRIPTION
RTCA/Makefile
RTCA/NAMESPACE
RTCA/NEWS
RTCA/R
RTCA/R/AllClasses.R
RTCA/R/AllGenerics.R
RTCA/R/AllMethods.R
RTCA/R/RTCAfunctions.R
RTCA/R/algorithms.R
RTCA/R/spectramaxImport.R
RTCA/R/visualization.R
RTCA/build
RTCA/build/vignette.rds
RTCA/inst
RTCA/inst/NEWS
RTCA/inst/TODO
RTCA/inst/doc
RTCA/inst/doc/RTCAtransformation.R
RTCA/inst/doc/RTCAtransformation.Rnw
RTCA/inst/doc/RTCAtransformation.pdf
RTCA/inst/doc/aboutRTCA.R
RTCA/inst/doc/aboutRTCA.Rnw
RTCA/inst/doc/aboutRTCA.pdf
RTCA/inst/extdata
RTCA/inst/extdata/WST-example-1.csv
RTCA/inst/extdata/WST-example-2.csv
RTCA/inst/extdata/testOutput.csv
RTCA/inst/extdata/testOutputPhenoData.csv
RTCA/man
RTCA/man/RTCA-class.Rd
RTCA/man/RTCAtimeline-class.Rd
RTCA/man/alphaNames.Rd
RTCA/man/combineRTCA.Rd
RTCA/man/controlView.Rd
RTCA/man/derivativeTransform.Rd
RTCA/man/factor2numeric.Rd
RTCA/man/interpolationTransform.Rd
RTCA/man/nearestTimeIndex.Rd
RTCA/man/parseRTCA.Rd
RTCA/man/plateView.Rd
RTCA/man/plotGridEffect.Rd
RTCA/man/ratioTransform.Rd
RTCA/man/rgrTransform.Rd
RTCA/man/sliceRTCA.Rd
RTCA/man/smoothTransform.Rd
RTCA/man/spectramaxImport.Rd
RTCA/tests
RTCA/tests/essentials.R
RTCA/vignettes
RTCA/vignettes/RTCAtransformation.Rnw
RTCA/vignettes/aboutRTCA.Rnw