flowCHIC: Analyze flow cytometric data using histogram information

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A package to analyze flow cytometric data of complex microbial communities based on histogram images

Author
Joachim Schumann <joachim.schumann@ufz.de>, Christin Koch <christin.koch@ufz.de>, Ingo Fetzer <info.fetzer@stockholmresilience.su.se>, Susann Müller <susann.mueller@ufz.de>
Date of publication
None
Maintainer
Author: Joachim Schumann <joachim.schumann@ufz.de>
License
GPL-2
Version
1.8.0
URLs

View on Bioconductor

Man pages

abiotic_incol
Dataset with abiotic data
calculate_overlaps_xor
Calculate overlap and XOR images
fcs_to_img
FCS files to images
flowCHIC_package
Analyze flow cytometric data using histogram information
img_sub
Create image subsets
plot_nmds
NMDS plot of samples
Results_overlaps
Dataset with labels and sums of informative pixels within the...
Results_overlaps_incol
Dataset with labels and sums of informative pixels within the...
Results_overlaps_mix
Dataset with labels and sums of informative pixels within the...
Results_xor
Dataset with labels and intensity values of the FCS files...
Results_xor_incol
Dataset with labels and intensity values of the second...
Results_xor_mix
Dataset with labels and intensity values of the first...

Files in this package

flowCHIC/DESCRIPTION
flowCHIC/NAMESPACE
flowCHIC/R
flowCHIC/R/AllGenerics.R
flowCHIC/R/calculate_overlaps_xor.R
flowCHIC/R/fcs_to_img.R
flowCHIC/R/img_sub.R
flowCHIC/R/plot_nmds.R
flowCHIC/build
flowCHIC/build/vignette.rds
flowCHIC/data
flowCHIC/data/Results_overlaps.txt.gz
flowCHIC/data/Results_overlaps_incol.txt.gz
flowCHIC/data/Results_overlaps_mix.txt.xz
flowCHIC/data/Results_xor.txt.gz
flowCHIC/data/Results_xor_incol.txt.bz2
flowCHIC/data/Results_xor_mix.txt.xz
flowCHIC/data/abiotic_incol.txt.gz
flowCHIC/inst
flowCHIC/inst/doc
flowCHIC/inst/doc/flowCHICmanual.R
flowCHIC/inst/doc/flowCHICmanual.Rnw
flowCHIC/inst/doc/flowCHICmanual.pdf
flowCHIC/inst/extdata
flowCHIC/inst/extdata/BCK_30_Sep_11_21.fcs
flowCHIC/inst/extdata/BCK_30_Sep_11_30.fcs
flowCHIC/inst/extdata/BCK_30_Sep_11_77.fcs
flowCHIC/man
flowCHIC/man/Results_overlaps.Rd
flowCHIC/man/Results_overlaps_incol.Rd
flowCHIC/man/Results_overlaps_mix.Rd
flowCHIC/man/Results_xor.Rd
flowCHIC/man/Results_xor_incol.Rd
flowCHIC/man/Results_xor_mix.Rd
flowCHIC/man/abiotic_incol.Rd
flowCHIC/man/calculate_overlaps_xor.Rd
flowCHIC/man/fcs_to_img.Rd
flowCHIC/man/flowCHIC_package.Rd
flowCHIC/man/img_sub.Rd
flowCHIC/man/plot_nmds.Rd
flowCHIC/vignettes
flowCHIC/vignettes/flowCHICmanual.Rnw
flowCHIC/vignettes/flowCHICmanual.bib