flowCHIC: Analyze flow cytometric data using histogram information
Version 1.10.0

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Browse man pages Browse package API and functions Browse package files

AuthorJoachim Schumann <joachim.schumann@ufz.de>, Christin Koch <christin.koch@ufz.de>, Ingo Fetzer <info.fetzer@stockholmresilience.su.se>, Susann Müller <susann.mueller@ufz.de>
Bioconductor views CellBasedAssays Clustering FlowCytometry Software Visualization
Date of publicationNone
MaintainerAuthor: Joachim Schumann <joachim.schumann@ufz.de>
LicenseGPL-2
Version1.10.0
URL http://www.ufz.de/index.php?en=16773
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowCHIC")

Man pages

abiotic_incol: Dataset with abiotic data
calculate_overlaps_xor: Calculate overlap and XOR images
fcs_to_img: FCS files to images
flowCHIC_package: Analyze flow cytometric data using histogram information
img_sub: Create image subsets
plot_nmds: NMDS plot of samples
Results_overlaps: Dataset with labels and sums of informative pixels within the...
Results_overlaps_incol: Dataset with labels and sums of informative pixels within the...
Results_overlaps_mix: Dataset with labels and sums of informative pixels within the...
Results_xor: Dataset with labels and intensity values of the FCS files...
Results_xor_incol: Dataset with labels and intensity values of the second...
Results_xor_mix: Dataset with labels and intensity values of the first...

Functions

Results_overlaps Man page
Results_overlaps_incol Man page
Results_overlaps_mix Man page
Results_xor Man page
Results_xor_incol Man page
Results_xor_mix Man page
abiotic_incol Man page
calculate_overlaps_xor Man page
calculate_overlaps_xor,character-method Man page
fcs_to_img Man page
fcs_to_img,character-method Man page
flowCHIC Man page
img_sub Man page
img_sub,character-method Man page
plot_nmds Man page
plot_nmds,data.frame,data.frame-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R
R/calculate_overlaps_xor.R
R/fcs_to_img.R
R/img_sub.R
R/plot_nmds.R
build
build/vignette.rds
data
data/Results_overlaps.txt.gz
data/Results_overlaps_incol.txt.gz
data/Results_overlaps_mix.txt.xz
data/Results_xor.txt.gz
data/Results_xor_incol.txt.bz2
data/Results_xor_mix.txt.xz
data/abiotic_incol.txt.gz
inst
inst/doc
inst/doc/flowCHICmanual.R
inst/doc/flowCHICmanual.Rnw
inst/doc/flowCHICmanual.pdf
inst/extdata
inst/extdata/BCK_30_Sep_11_21.fcs
inst/extdata/BCK_30_Sep_11_30.fcs
inst/extdata/BCK_30_Sep_11_77.fcs
man
man/Results_overlaps.Rd
man/Results_overlaps_incol.Rd
man/Results_overlaps_mix.Rd
man/Results_xor.Rd
man/Results_xor_incol.Rd
man/Results_xor_mix.Rd
man/abiotic_incol.Rd
man/calculate_overlaps_xor.Rd
man/fcs_to_img.Rd
man/flowCHIC_package.Rd
man/img_sub.Rd
man/plot_nmds.Rd
vignettes
vignettes/flowCHICmanual.Rnw
vignettes/flowCHICmanual.bib
flowCHIC documentation built on May 20, 2017, 10:23 p.m.