rprops/Phenoflow_package

Advanced analysis of microbial flow cytometry data

rprops/Phenoflow_package

Advanced analysis of microbial flow cytometry data

RGLab/CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

LBMC/criblejurkat

Analysis of FACS data for the Jurkat crible project

plantarum/flowPloidy

Analyze flow cytometer data to determine sample ploidy

Bioconductor-mirror/flowPloidy

Analyze flow cytometer data to determine sample ploidy

flowPloidy

Analyze flow cytometer data to determine sample ploidy

flowCyBar

Analyze flow cytometric data using gate information

Bioconductor-mirror/flowCyBar

Analyze flow cytometric data using gate information

flowCHIC

Analyze flow cytometric data using histogram information

Bioconductor-mirror/flowCHIC

Analyze flow cytometric data using histogram information

wrightrc/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

Bioconductor-mirror/flowTime

Annotation and analysis of biological dynamical systems using flow cytometry

Bioconductor-mirror/flowPeaks

An R package for flow data clustering

flowPeaks

An R package for flow data clustering

Sconify

A toolkit for performing KNN-based statistics for flow and mass cytometry data

tjburns08/Sconify

A toolkit for performing KNN-based statistics for flow and mass cytometry data

flowQB

Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations

Bioconductor-mirror/flowQB

Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations

Bioconductor-mirror/flowAI

Automatic and interactive quality control for flow cytometry data

flowAI

Automatic and interactive quality control for flow cytometry data

cytolib

C++ infrastructure for representing and interacting with the gated cytometry

flowClust

Clustering for Flow Cytometry

RGLab/flowClust

Clustering for Flow Cytometry

Bioconductor-mirror/flowClust

Clustering for Flow Cytometry

flowMerge

Cluster Merging for Flow Cytometry Data

RGLab/flowMerge

Cluster Merging for Flow Cytometry Data

Bioconductor-mirror/flowMerge

Cluster Merging for Flow Cytometry Data

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

Bioconductor-mirror/COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

RGLab/COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

flowBin

Combining multitube flow cytometry data by binning

Bioconductor-mirror/flowBin

Combining multitube flow cytometry data by binning

tchitchek-lab/CytoCompare

Computational comparisons of cytometry profiles

RGLab/boost2protobuf

Convert the GatingSet from Boost serialization to protocol buffer format

KoenAStam/cytofast

cytofast - A quick visualization and analysis tool for CyTOF data

cytofkit

cytofkit: an integrated mass cytometry data analysis pipeline

haoeric/cytofkit_devel

cytofkit: an integrated mass cytometry data analysis pipeline

Bioconductor-mirror/cytofkit

cytofkit: an integrated mass cytometry data analysis pipeline

JinmiaoChenLab/cytofkit

cytofkit: an integrated mass cytometry data analysis pipeline

diffcyt

Differential discovery in high-dimensional cytometry via high-resolution clustering

lmweber/diffcyt

Differential discovery in high-dimensional cytometry via high-resolution clustering

Bioconductor-mirror/flowFit

Estimate proliferation in cell-tracking dye studies

flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor-mirror/flowFP

Fingerprinting for Flow Cytometry

flowFP

Fingerprinting for Flow Cytometry

Bioconductor-mirror/flowBeads

flowBeads: Analysis of flow bead data

flowBeads

flowBeads: Analysis of flow bead data

pontikos/flowBeads

flowBeads: Analysis of flow bead data

Bioconductor-mirror/flowClean

flowClean

cafletezbrant/flowClean

flowClean

flowClean

flowClean

flowCore

flowCore: Basic structures for flow cytometry data

Bioconductor-mirror/flowCore

flowCore: Basic structures for flow cytometry data

mlux86/flowLearn

flowLearn

flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

Bioconductor-mirror/flowPlots

flowPlots: analysis plots and data class for gated flow cytometry data

FlowRepositoryR

FlowRepository R Interface

Bioconductor-mirror/FlowRepositoryR

FlowRepository R Interface

Bioconductor-mirror/CytoML

GatingML interface for openCyto

CytoML

GatingML interface for openCyto

openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor-mirror/openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor-mirror/SamSPECTRAL

Identifies cell population in flow cytometry data.

SamSPECTRAL

Identifies cell population in flow cytometry data.

Bioconductor-mirror/immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor-mirror/flowWorkspace

Infrastructure for representing and interacting with the gated cytometry

flowWorkspace

Infrastructure for representing and interacting with the gated cytometry

jhsiao999/flowMap

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

Bioconductor-mirror/flowMap

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

flowMap

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

flowMatch

Matching and meta-clustering in flow cytometry

Bioconductor-mirror/flowMatch

Matching and meta-clustering in flow cytometry

tchitchek-lab/CytoBackBone

Merging of phenotype information from different cytometric profiles

MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

hzc363/MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

armbrustlab/flowPhyto

Methods for Continuous Flow Cytometry

MIMOSA

Mixture Models for Single-Cell Assays

RGLab/MIMOSA

Mixture Models for Single-Cell Assays

Bioconductor-mirror/MIMOSA

Mixture Models for Single-Cell Assays

Bioconductor-mirror/ncdfFlow

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

ncdfFlow

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Bioconductor-mirror/flowMeans

Non-parametric Flow Cytometry Data Gating

flowMeans

Non-parametric Flow Cytometry Data Gating

Bioconductor-mirror/oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)

yongkee/oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)

JinmiaoChenLab/oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)

oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)

RchyOptimyx

Optimyzed Cellular Hierarchies for Flow Cytometry

Bioconductor-mirror/RchyOptimyx

Optimyzed Cellular Hierarchies for Flow Cytometry

flowTrans

Parameter Optimization for Flow Cytometry Data Transformation

Bioconductor-mirror/flowTrans

Parameter Optimization for Flow Cytometry Data Transformation

Bioconductor-mirror/flowType

Phenotyping Flow Cytometry Assays

flowType

Phenotyping Flow Cytometry Assays

jmeskas/flowCut

Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

GateFinder

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Teculos/GateFinder

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Bioconductor-mirror/flowQ

Quality control for flow cytometry

flowQ

Quality control for flow cytometry

QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

Bioconductor-mirror/QUALIFIER

Quality Control of Gated Flow Cytometry Experiments

RGLab/cytoCore

R bindings for cytolib c++ library

CytoDx

Robust prediction of clinical outcomes using cytometry data without cell gating

hzc363/CytoDx

Robust prediction of clinical outcomes using cytometry data without cell gating

RGLab/flowIncubator

Routines that don't belong to the core flow packages yet.

jmeskas/flowCL

Semantic labelling of flow cytometric cell populations

Bioconductor-mirror/flowCL

Semantic labelling of flow cytometric cell populations

flowCL

Semantic labelling of flow cytometric cell populations

flowDensity

Sequential Flow Cytometry Data Gating

RGLab/flowDensity

Sequential Flow Cytometry Data Gating

Bioconductor-mirror/flowDensity

Sequential Flow Cytometry Data Gating

mehrnoushmalek/flowDensity

Sequential Flow Cytometry Data Gating

jdgagnon/plotGrouper

Shiny app GUI wrapper for ggplot with built-in statistical analysis

olimora/mySPADE

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor-mirror/spade

SPADE -- An analysis and visualization tool for Flow Cytometry

nolanlab/spade

SPADE -- An analysis and visualization tool for Flow Cytometry

tchitchek-lab/SPADEVizR

SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results

flowStats

Statistical methods for the analysis of flow cytometry data

Bioconductor-mirror/flowStats

Statistical methods for the analysis of flow cytometry data

Bioconductor-mirror/plateCore

Statistical tools and data structures for plate-based flow cytometry

plateCore

Statistical tools and data structures for plate-based flow cytometry

cydar

Using Mass Cytometry for Differential Abundance Analyses

MarioniLab/cydar

Using Mass Cytometry for Differential Abundance Analyses

Bioconductor-mirror/cydar

Using Mass Cytometry for Differential Abundance Analyses

saeyslab/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor-mirror/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor-mirror/flowUtils

Utilities for flow cytometry

flowUtils

Utilities for flow cytometry

flowVS

Variance stabilization in flow cytometry (and microarrays)

Bioconductor-mirror/flowVS

Variance stabilization in flow cytometry (and microarrays)

Bioconductor-mirror/flowViz

Visualization for flow cytometry

flowViz

Visualization for flow cytometry

Bioconductor-mirror/ggcyto

Visualize Cytometry data with ggplot

ggcyto

Visualize Cytometry data with ggplot

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